Amino acids–nucleotides biomolecular recognition: from biological occurrence to affinity chromatography

F. Sousa; C. Cruz; J. A. Queiroz

doi:10.1002/jmr.1053

journal article Oct 28, 2010

Amino acids–nucleotides biomolecular recognition: from biological occurrence to affinity chromatography

F. Sousa C. Cruz

J. A. Queiroz

Journal of Molecular Recognition Vol. 23 No. 6 pp. 505-518 · Wiley

View at Publisher Save 10.1002/jmr.1053

Abstract

AbstractIn this review, the protein–DNA interactions are discussed considering different perspectives, and the biological occurrence of this interaction is explained at atomic level. The evaluation of the amino acid–nucleotide recognition has been investigated analysing datasets for predicting the association preferences and the geometry that favours the interaction.Based on this knowledge, an affinity chromatographic method was developed also exploiting this biological favoured contact. In fact, the implementation of this technique brings the possibility to apply the concept of molecular interactions to the development of new purification methodologies. In addition, the integration of the information recovered by all the different perspectives can bring new insights about some biological mechanisms, though not totally clarified. Copyright © 2010 John Wiley & Sons, Ltd.

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References

67

[1]

Anderson RJ "Plasmid DNA and viral vector‐based vaccines for the treatment of cancer" Vaccine (2005) 10.1016/j.vaccine.2007.05.030

[2]

10.1016/j.sbi.2004.05.004

[3]

Bates AD (2005) 10.1093/oso/9780198567097.001.0001

[4]

The Protein Data Bank

H. M. Berman

Nucleic Acids Research 10.1093/nar/28.1.235

[5]

10.1021/ja049620g

[6]

10.1002/chem.200500010

[7]

10.1021/mp060098

[8]

10.1016/j.pbiomolbio.2007.03.016

[9]

Clark DP (2005)

[10]

Hydrogen bonds in protein–DNA complexes: Where geometry meets plasticity

Stavroula A. Coulocheri, Diomidis G. Pigis, Kostas A. Papavassiliou et al.

Biochimie 10.1016/j.biochi.2007.07.020

[11]

10.1016/j.vaccine.2004.10.018

[12]

10.1016/j.chroma.2004.09.050

[13]

10.1006/jmbi.1997.1464

[14]

10.1006/jmbi.1994.1022

[15]

10.1016/j.gene.2008.11.003

[16]

10.1016/j.biochi.2008.03.012

[17]

10.1093/nar/gkh128

[18]

10.1016/s0378-4347(00)80842-7

[19]

Karp G (2007)

[20]

10.1016/s0092-8674(04)00044-3

[21]

10.1038/365520a0

[22]

10.1017/s0033583505004105

[23]

10.1002/prot.20607

[24]

10.1128/mcb.15.8.4375

[25]

10.1016/s0165-022x(01)00220-2

[26]

Nicholas M Luscombe, Susan E Austin, Helen M Berman et al.

Genome Biology 10.1186/gb-2000-1-1-reviews001

[27]

10.1093/nar/29.13.2860

[28]

10.1006/jmbi.1995.0559

[29]

10.1006/jmbi.1998.1660

[30]

10.1093/nar/26.10.2306

[31]

10.1002/jcc.20954

[32]

10.1038/335294a0

[33]

10.1016/0092-8674(93)80079-t

[34]

10.1093/nar/30.5.1182

[35]

10.1093/nar/gki875

[36]

10.1021/jp0446231

[37]

10.1046/j.1365-2443.2000.00335.x

[38]

PROTEIN-DNA RECOGNITION

Carl O. Pabo, Robert T. Sauer

Annual Review of Biochemistry 10.1146/annurev.bi.53.070184.001453

[39]

10.1146/annurev.bi.61.070192.005201

[40]

10.1038/sj.onc.1207324

[41]

What Drives Proteins into the Major or Minor Grooves of DNA?

Peter L. Privalov, Anatoly I. Dragan, Colyn Crane-Robinson et al.

Journal of Molecular Biology 10.1016/j.jmb.2006.09.059

[42]

10.1006/jmbi.2001.5154

[43]

10.1016/s0959-440x(99)00052-4

[44]

10.1038/nature01595

[45]

10.1016/j.sbi.2009.03.002

[46]

Cation–π/H-bond Stair Motifs at Protein–DNA Interfaces

Marianne Rooman, Jacky Liévin, Eric Buisine et al.

Journal of Molecular Biology 10.1016/s0022-2836(02)00263-2

[47]

Sequence-specific recognition of double helical nucleic acids by proteins.

N C Seeman, J M Rosenberg, A. RICH

Proceedings of the National Academy of Sciences 10.1073/pnas.73.3.804

[48]

10.1038/nrg2591

[49]

10.1073/pnas.80.1.51

[50]

10.1016/j.ab.2005.03.011

Showing 50 of 67 references

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Details

Published: Oct 28, 2010
Vol/Issue: 23(6)
Pages: 505-518
License: View

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Cite This Article

F. Sousa, C. Cruz, J. A. Queiroz (2010). Amino acids–nucleotides biomolecular recognition: from biological occurrence to affinity chromatography. Journal of Molecular Recognition, 23(6), 505-518. https://doi.org/10.1002/jmr.1053

Amino acids–nucleotides biomolecular recognition: from biological occurrence to affinity chromatography

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