journal article Jun 17, 2021

Nicking and fragmentation are responsible for α‐lactalbumin amyloid fibril formation at acidic pH and elevated temperature

Protein Science Vol. 30 No. 9 pp. 1919-1934 · Wiley
Abstract
AbstractAmyloid fibrils are ordered aggregates that may be formed from disordered, partially unfolded, and fragments of proteins and peptides. There are several diseases, which are due to the formation and deposition of insoluble β‐sheet protein aggregates in various tissue, collectively known as amyloidosis. Here, we have used bovine α‐lactalbumin as a model protein to understand the mechanism of amyloid fibril formation at pH 1.6 and 65°C under non‐reducing conditions. Amyloid fibril formation is confirmed by Thioflavin T fluorescence and atomic force microscopy (AFM). Our finding demonstrates that hydrolysis of peptide bonds occurs under these conditions, which results in nicking and fragmentation. The nicking and fragmentation have been confirmed on non‐reducing and reducing gel. We have identified the fragments by matrix‐assisted laser desorption ionization‐time of flight (MALDI‐TOF) mass spectrometry. The fragmentation may initiate nucleation as it coincides with AFM images. Conformational changes associated with monomer resulting in fibrillation are shown by circular dichroism and Raman spectroscopy. The current study highlights the importance of nicking and fragmentation in amyloid fibril formation, which may help understand the role of acidic pH and proteolysis under in vivo conditions in the initiation of amyloid fibril formation.
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References
76
[2]
The Amyloid State of Proteins in Human Diseases

David Eisenberg, Mathias Jucker

Cell 10.1016/j.cell.2012.02.022
[4]
A new era for understanding amyloid structures and disease

Matthew G. Iadanza, Matthew P. Jackson, Eric W. Hewitt et al.

Nature Reviews Molecular Cell Biology 10.1038/s41580-018-0060-8
[5]
Common core structure of amyloid fibrils by synchrotron X-ray diffraction 1 1Edited by F. E. Cohen

Margaret Sunde, Louise C Serpell, Mark Bartlam et al.

Journal of Molecular Biology 10.1006/jmbi.1997.1348
[8]
Thakur AK "ToxPoint: A need for regulatory thinking for amyloid‐based biomaterials" Toxicol Sci (2021)
[10]
Direct Observation of the Interconversion of Normal and Toxic Forms of α-Synuclein

Nunilo Cremades, Samuel I.A. Cohen, Emma Deas et al.

Cell 10.1016/j.cell.2012.03.037
[11]
The amyloid hypothesis of Alzheimer's disease at 25 years

Dennis J Selkoe, John Hardy

EMBO Molecular Medicine 10.15252/emmm.201606210
[16]
Amyloid formation under physiological conditions proceeds via a native-like folding intermediate

Thomas R Jahn, Martin J Parker, Steve W Homans et al.

Nature Structural & Molecular Biology 10.1038/nsmb1058
[24]
The Complete Amino Acid Sequence of Bovine α-Lactalbumin

Keith Brew, Francis J. Castellino, Thomas C. Vanaman et al.

Journal of Biological Chemistry 10.1016/s0021-9258(19)63827-5
[26]
α‐lactalbumin: compact state with fluctuating tertiary structure?

D.A. Dolgikh, R.I. Gilmanshin, E.V. Brazhnikov et al.

FEBS Letters 10.1016/0014-5793(81)80642-4
[27]
The molten globule state of α‐lactalbumin

Kunihiro Kuwajima

The FASEB Journal 10.1096/fasebj.10.1.8566530
[33]
Limited proteolysis of bovine α‐lactalbumin: Isolation and characterization of protein domains

Patrizia Polverino de Laureto, Elena Scaramella, Marta Frigo et al.

Protein Science 10.1110/ps.8.11.2290
[34]
Stepwise proteolytic removal of the β subdomain in α‐lactalbumin

Patrizia Polverino de Laureto, Daniela Vinante, Elena Scaramella et al.

European Journal of Biochemistry 10.1046/j.1432-1327.2001.02352.x
[39]
Formation of Amyloid Fibers Triggered by Phosphatidylserine-Containing Membranes

Hongxia Zhao, Esa K. J. Tuominen, Paavo K. J. Kinnunen

Biochemistry 10.1021/bi049002c

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Published
Jun 17, 2021
Vol/Issue
30(9)
Pages
1919-1934
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Cite This Article
Rahamtullah, Rajesh Mishra (2021). Nicking and fragmentation are responsible for α‐lactalbumin amyloid fibril formation at acidic pH and elevated temperature. Protein Science, 30(9), 1919-1934. https://doi.org/10.1002/pro.4144
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