Distribution and genetic characterization of bird rape mustard (Brassica rapa) populations and analysis of glyphosate resistance introgression

Martin Laforest; Sara Martin; Brahim Soufiane; Katherine Bisaillon; Lydia Maheux; Sylvain Fortin; Tracey James; David Miville; Annie Marcoux; Marie‐Josée Simard

doi:10.1002/ps.7170

journal article Sep 28, 2022

Distribution and genetic characterization of bird rape mustard (Brassica rapa) populations and analysis of glyphosate resistance introgression

Martin Laforest

Sara Martin

Brahim Soufiane Katherine Bisaillon Lydia Maheux

Sylvain Fortin Tracey James David Miville Annie Marcoux Marie‐Josée Simard

Pest Management Science Vol. 78 No. 12 pp. 5471-5478 · Wiley

View at Publisher Save 10.1002/ps.7170

Abstract

AbstractBackgroundThe introgression of a transgene conferring glyphosate resistance from Brassica napus (rapeseed, canola) to Brassica rapa weeds (bird rape) was documented at a single location in 2007. In 2015, several cases of glyphosate resistant mustard were reported by growers in areas where rapeseed was seldom grown.ResultsSurvey result indicated glyphosate resistant bird rape mustard is present in areas where glyphosate tolerant corn and soybean are often grown in rotation. Genetic analyses reveal that hybridization followed by introgression and progressive loss of chromosome is the likely mechanism for the horizontal gene transfer (HGT) of glyphosate resistance.ConclusionIntrogression of the glyphosate‐resistance conferring transgene in the populations studied appears to have occurred several times, consistent with the ease for B. rapa to form hybrids with B. napus. The introduction of a transgene into a crop should therefore take into account the weediness of the species that share a common genome and their ability to form hybrids. We provide here such an example between B. napus and B. rapa, and potentially between B. napus and Raphanistrum raphanistrum. © 2022 Her Majesty the Queen in Right of Canada. Pest Management Science © 2022 Society of Chemical Industry. Reproduced with the permission of the Minister of Agriculture and Agri‐Food Canada.

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References

44

[1]

10.4141/cjps07203

[2]

Rousseau C "Histoire, habitat et distribution de 220 plantes introduites au Québec" Nat Can (1968)

[3]

U N "Genomic analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization" Jpn J Bot (1935)

[4]

10.1016/b978-0-12-384947-2.00585-7

[5]

Statistics Canada.Estimated areas yield production average farm price and total farm value of principal field crops in metric and imperial units(2021).https://www150.statcan.gc.ca/t1/tbl1/en/tv.action?pid=3210035901.

[6]

10.4141/p05-193

[7]

10.1007/s10681-007-9444-0

[8]

10.1139/b06-135

[9]

10.1007/s00122-003-1278-0

[10]

10.1111/j.1365-294x.2007.03567.x

[11]

Mizushima U "Karyogenetic studies of species and genus hybrids in the tribe Brassiceae of Cruciferae" Tohoku J Agric Res (1950)

[12]

10.1007/s001220050581

[13]

10.1046/j.1365-294x.1999.00596.x

[14]

Holm LR (1997)

[15]

10.4161/gmcr.2.3.18931

[16]

Transgene escape and persistence in an agroecosystem: the case of glyphosate-resistant Brassica rapa L. in central Argentina

Claudio E. Pandolfo, Alejandro Presotto, Francisco Torres Carbonell et al.

Environmental Science and Pollution Research 10.1007/s11356-017-0726-3

[17]

10.1186/s13007-017-0200-8

[18]

10.1021/jf0483467

[19]

10.1007/978-1-4939-8944-7_15

[20]

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger, Marc Lohse, Bjoern Usadel

Bioinformatics 10.1093/bioinformatics/btu170

[21]

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin

Bioinformatics 10.1093/bioinformatics/btp324

[22]

10.1038/s41438-018-0071-9

[23]

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

Heng Li

Bioinformatics 10.1093/bioinformatics/btr509

[24]

The Sequence Alignment/Map format and SAMtools

Heng Li, Bob Handsaker, Alec Wysoker et al.

Bioinformatics 10.1093/bioinformatics/btp352

[25]

The variant call format and VCFtools

Petr Danecek, Adam Auton, Goncalo Abecasis et al.

Bioinformatics 10.1093/bioinformatics/btr330

[26]

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

H. E. L. Lischer, L. Excoffier

Bioinformatics 10.1093/bioinformatics/btr642

[27]

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

Anil Raj, Matthew Stephens, Jonathan K Pritchard

Genetics 10.1534/genetics.114.164350

[28]

R Core Team (2020)

[29]

Poppr : an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald

PeerJ 10.7717/peerj.281

[30]

GenBank

D. A. Benson

Nucleic Acids Research 10.1093/nar/gki063

[31]

Database resources of the National Center for Biotechnology Information

Richa Agarwala, T. Barrett, Jeff Beck et al.

Nucleic Acids Research 10.1093/nar/gkx1095

[32]

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al.

Journal of Molecular Biology 10.1016/s0022-2836(05)80360-2

[33]

10.1002/ece3.2096

[34]

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

Boulos Chalhoub, France Denoeud, Shengyi Liu et al.

Science 10.1126/science.1253435

[35]

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

H. Thorvaldsdottir, J. T. Robinson, J. P. Mesirov

Briefings in Bioinformatics 10.1093/bib/bbs017

[36]

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

Matthieu Foll, Oscar Gaggiotti

Genetics 10.1534/genetics.108.092221

[37]

10.1007/s11356-016-7670-5

[38]

10.1534/genetics.113.159574

[39]

10.1105/tpc.110.075986

[40]

10.1038/nature25188

[41]

10.3389/fpls.2020.00200

[42]

Sabourin A (2017)

[43]

10.1007/s001220051429

[44]

10.1007/pl00002909

Metrics

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Citations

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References

Details

Published: Sep 28, 2022
Vol/Issue: 78(12)
Pages: 5471-5478
License: View

Authors

M

Martin Laforest

Agriculture and Agri‐Food Canada (AAFC) Saint‐Jean‐sur‐Richelieu Research and Development Centre St‐Jean‐sur‐Richelieu Canada

S

Sara Martin

Agriculture and Agri‐Food Canada (AAFC) Ottawa Research and Development Centre Ottawa Canada

B

Brahim Soufiane

Agriculture and Agri‐Food Canada (AAFC) Saint‐Jean‐sur‐Richelieu Research and Development Centre St‐Jean‐sur‐Richelieu Canada

K

Katherine Bisaillon

Royal Canadian Mounted Police National Forensic Laboratory Services Surrey Canada

L

Lydia Maheux

Agriculture and Agri‐Food Canada (AAFC) Saint‐Jean‐sur‐Richelieu Research and Development Centre St‐Jean‐sur‐Richelieu Canada

S

Sylvain Fortin

Agriculture and Agri‐Food Canada (AAFC) Saint‐Jean‐sur‐Richelieu Research and Development Centre St‐Jean‐sur‐Richelieu Canada

T

Tracey James

Agriculture and Agri‐Food Canada (AAFC) Ottawa Research and Development Centre Ottawa Canada

D

David Miville

Ministère de l'Agriculture et de l'Alimentation du Québec Laboratoire d'expertise et de diagnostic en phytoprotection Québec Canada

A

Annie Marcoux

Ministère de l'Agriculture et de l'Alimentation du Québec Laboratoire d'expertise et de diagnostic en phytoprotection Québec Canada

M

Marie‐Josée Simard

Agriculture and Agri‐Food Canada (AAFC) Saint‐Jean‐sur‐Richelieu Research and Development Centre St‐Jean‐sur‐Richelieu Canada

Funding

Agriculture and Agri-Food Canada

Cite This Article

Martin Laforest, Sara Martin, Brahim Soufiane, et al. (2022). Distribution and genetic characterization of bird rape mustard (Brassica rapa) populations and analysis of glyphosate resistance introgression. Pest Management Science, 78(12), 5471-5478. https://doi.org/10.1002/ps.7170

Distribution and genetic characterization of bird rape mustard (Brassica rapa) populations and analysis of glyphosate resistance introgression

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