journal article Nov 01, 1987

Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes

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References
124
[1]
Ambler RP (1985) Protein sequencing and taxonomy. In: Jones D, Goodfellow M, Priest FG (eds) Twenty-five years of numerical taxonomy. Academic Press, New York, pp 307–335
[2]
Baumann P, Baumann L, Woolkalis MJ, Bang SS (1983) Evolutionary relationships inVibrio andPhotobacterium: a basis for a natural classification. Annu Rev Microbiol 37:369–398 10.1146/annurev.mi.37.100183.002101
[3]
Beverley SM, Wilson AC (1984) Molecular evolution inDrosophila and the higher Diptera. II. A time scale for fly evolution. J Mol Evol 21:1–13 10.1007/bf02100622
[4]
Blackman RK, Meselson M (1986) Interspecific nucleotide sequence comparisons used to identify regulatory and structural features of theDrosophila hsp82 gene. J Mol Biol 188:499–515 10.1016/s0022-2836(86)80001-8
[5]
Blumenberg M, Yanofsky C (1982) Evolutionary divergence of theCitrobacter freundii tryptophan operon regulatory region: comparison with other enteric bacteria. J Bacteriol 152:57–62 10.1128/jb.152.1.57-62.1982
[6]
Bodmer M, Ashburner M (1984) Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species ofDrosophila. Nature 309:425–430 10.1038/309425a0
[7]
Britten RJ (1986) Rates of DNA sequence evolution differ between taxonomic groups. Science 231:1393–1398 10.1126/science.3082006
[8]
Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitochondrial DNA sequences of primates: tempo and mode of evolution. J Mol Evol 18:225–239 10.1007/bf01734101
[9]
Buck JB (1978) Functions and evolution of bioluminescence. In: Herring PJ (ed) Bioluminescence in action. Academic Press, New York, pp 419–460
[10]
Busslinger M, Rusconi S, Birnstiel ML (1982) An unusual evolutionary behaviour of a sea urchin histone gene cluster. EMBO J 1:27–33 10.1002/j.1460-2075.1982.tb01119.x
[11]
Carlin RK (1980) Poly(A): a new evolutionary probe. J Theor Biol 82:353–362 10.1016/0022-5193(80)90242-8
[12]
Chan Y-L, Gutell R, Noller HF, Wool IG (1984) The nucleotide sequence of a rat 18S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18S ribosomal ribonucleic acid. J Biol Chem 259:224–230 10.1016/s0021-9258(17)43645-3
[13]
Chang C, Meyerowitz EM (1986) Molecular cloning and DNA sequence of theArabidopsis thaliana alcohol dehydrogenase gene. Proc Natl Acad Sci USA 83:1408–1412 10.1073/pnas.83.5.1408
[14]
Chapman DJ, Schopf WJ (1983) Biological and biochemical effects of the development of an aerobic environment. In: Schopf JW (ed) Earth's earliest biosphere: its origin and evolution. Princeton University Press, Princeton NJ pp 302–320
[15]
Clarke PH, Lin H-C, Wilcox G (1982) The nucleotide sequence of thearaC regulatory gene inSalmonella typhimurium LT2. Gene 18:157–163 10.1016/0378-1119(82)90113-5
[16]
Cleary JM, Smith DW, Harding NE, Zyskind JW (1982) Primary structure of the chromosomal origins (oriC) ofEnterobacter aerogenes andKlebsiella pneumoniae: comparisons and evolutionary relationships. J Bacteriol 150:1467–1471 10.1128/jb.150.3.1467-1471.1982
[17]
Cloud P (1976) Beginnings of biospheric evolution and their biogeochemical consequences. Paleobiology 2:351–387 10.1017/s009483730000498x
[18]
Cocks GT, Wilson AC (1972) Enzyme evolution in the Enterobacteriaceae. J Bacteriol 110:793–802 10.1128/jb.110.3.793-802.1972
[19]
Colbert EH (1980) Evolution of the vertebrates: a history of the backboned animals through time, ed 3. John Wiley & Sons, New York
[20]
Connaughton JE, Rairkar A, Lockard RE, Kumar A (1984) Primary structure of rabbit 18S ribosomal RNA determined by direct sequencing. Nucleic Acids Res 12:4731–4745 10.1093/nar/12.11.4731
[21]
Cooke EM (1974)Escherichia coli and man. Churchill Livingstone, London.
[22]
Corby HDL, Pohill RM, Sprent RI (1983) Taxonomy. In: Broughton WJ (ed) Nitrogen fixation, vol 3. Legumes. Clarendon Press, London, pp 1–35
[23]
Crawford IP, Nichols BP, Yanofsky C (1980) Nucleotide sequence of thetrpB gene inEscherichia coli andSalmonella typhimurium. J Mol Biol 142:489–502 10.1016/0022-2836(80)90259-4
[24]
Crepet WL, Taylor DW (1985) The diversification of the Leguminosae: first fossil evidence of the Mimosoideae and Papilionideae. Science 228:1087–1089 10.1126/science.228.4703.1087
[25]
De Wachter R, Huysmans E, Vandenberghe A (1985) 5S ribosomal RNA as a tool for studying evolution. In: Schleifer KH, Stackebrandt E (eds) Evolution of prokaryotes. Academic Press, New York, pp 115–141
[26]
Dickerson RE (1971) The structure of cytochromec and the rates of molecular evolution. J Mol Evol 1:26–45 10.1007/bf01659392
[27]
Dickerson RE (1980) Cytochrome c and the evolution of energy metabolism. Sci Am 242(3):136–153 10.1038/scientificamerican0380-136
[28]
Duncan K, Lewendon A, Coggins JR (1984) The complete amino acid sequence ofEscherichia coli 5-enolpyruvylshikimate 3-phosphate synthase. FEBS Lett 170:59–63 10.1016/0014-5793(84)81368-x
[29]
Eckenrode VK, Arnold J, Meagher RB (1985) Comparison of the nucleotide sequence of soybean 18S rRNA with the sequences of other small-subunit rRNAs. J Mol Evol 21:259–269 10.1007/bf02102358
[30]
Erdmann VA, Wolters J (1986) Collection of published 5S, 5.8S and 4.5S ribosomal RNA sequences. Nucleic Acids Res 14:r1-r60 10.1093/nar/14.suppl.r1
[31]
Erickson BD, Burton ZF, Watanabe KK, Burgess RR (1985) Nucleotide sequence of therpsU-dnaG-rpoD operon fromSalmonella typhimurium and a comparison of this sequence with the homologous operon ofEscherichia coli. Gene 40:67–78 10.1016/0378-1119(85)90025-3
[32]
Fox GE, Stackebrandt E, Hespell RB, Gibson J, Maniloff J, Dyer TA, Wolfe RS, Balch WE, Tanner RS, Magrum LJ, Zablen LB, Blakemore R, Gupta R, Bonen L, Lewis BJ, Stahl DA, Luehrsen KR, Chen KN, Woese CR (1980) The phylogeny of prokaryotes. Science 209:457–463 10.1126/science.6771870
[33]
Freudl R, Cole ST (1983) Cloning and characterization of theompA gene fromSalmonella typhimurium. Eur J Biochem 134:497–502 10.1111/j.1432-1033.1983.tb07594.x
[34]
George DG, Hunt LT, Yeh L-S, Barker WC (1985) New perspectives on bacterial ferredoxin evolution. J Mol Evol 22:20–31 10.1007/bf02105801
[35]
Gibbons RJ, Kapsimalis B (1967) Estimates of the overall rate of growth of the intestinal microflora of hamsters, guinea pigs, and mice. J Bacteriol 93:510–512 10.1128/jb.93.1.510-512.1967
[36]
Gillespie JH (1986) Natural selection and the molecular clock. Mol Biol Evol 3:138–155
[37]
Guoy M, Gautier C (1982) Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Res 10:7055–7074 10.1093/nar/10.22.7055
[38]
Harland WB (1967) The fossil record. London Geological Society, London
[39]
Hasegawa M, Iida Y, Yano T, Takaiwa F, Iwabuchi M (1985) Phylogenetic relationships among eukaryotic kingdoms in-ferred from ribosomal RNA sequences. J Mol Evol 22:32–38 10.1007/bf02105802
[40]
Hastings JW, Nealson KH (1981) The symbiotic luminous bacteria. In: Starr MP, Stolp H, Trüper HG, Balows A, Schlegel HG (eds) The prokaryotes: a handbook on habitats, isolation, and identification of bacteria. Springer-Verlag, New York, pp 1332–1345
[41]
Helm-Bychowski KM, Wilson AC (1986) Rates of nuclear DNA evolution in pheasant-like birds: evidence from restriction maps. Proc Natl Acad Sci USA 83:688–692 10.1073/pnas.83.3.688
[42]
Helm-Bychowski KM, Wilson AC (1988) Restriction maps and the temporal calibration of nuclear DNA evolution in phasianoid birds. Proc Int Ornith Congr 19 (in press)
[43]
Hennecke H, Kaluza K, Fuhrman M, Ludwig W, Stackebrandt E (1985) Concurrent evolution of nitrogenase genes and 16S rRNA inRhizobium species and other nitrogen fixing bacteria. Arch Microbiol 142:342–348 10.1007/bf00491901
[44]
Herring PJ (1977) Luminescence in cephalopods and fishes. Symp Zool Soc Lond 38:127–159
[45]
Hofmann HJ, Schopf JW (1983) Early proterozoic microfossils. In: Schopf JW (ed) Earth's earliest biosphere: its origin and evolution. Princeton University Press, Princeton NJ, pp 321–360
[46]
Holland HD (1984) The chemical evolution of the atmosphere. John Wiley & Sons, New York
[47]
Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S (1982) Rapid evolution of RNA genomes. Science 215: 1577–1585 10.1126/science.7041255
[48]
Holland HD, Lazar B, McCaffrey M (1986) Evolution of the atmosphere and oceans. Nature 320:27–33 10.1038/320027a0
[49]
Hori H, Osawa S (1978) Evolution of ribosomal proteins inEnterobacteriaceae. J Bacteriol 133:1089–1095 10.1128/jb.133.3.1089-1095.1978
[50]
Hori H, Osawa S (1979) Evolutionary change in 5S RNA secondary structure and a phylogenetic tree of 54 5S RNA species. Proc Natl Acad Sci USA 76:381–385 10.1073/pnas.76.1.381

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Published
Nov 01, 1987
Vol/Issue
26(1-2)
Pages
74-86
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Cite This Article
Howard Ochman, Allan C. Wilson (1987). Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes. Journal of Molecular Evolution, 26(1-2), 74-86. https://doi.org/10.1007/bf02111283