Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria

Peter Kämpfer; Martin Steiof; Wolfgang Dott

doi:10.1007/bf02539156

journal article Dec 01, 1991

Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria

Peter Kämpfer Martin Steiof Wolfgang Dott

Microbial Ecology Vol. 21 No. 1 pp. 227-251 · Springer Science and Business Media LLC

View at Publisher Save 10.1007/bf02539156

Topics

No keywords indexed for this article. Browse by subject →

References

46

[1]

Appelbaum PC, Leathers DJ (1984) Evaluation of the rapid NFT system for identification of gram-negative, nonfermenting rods. J. Clin. Microbiol. 20:730–734 10.1128/jcm.20.4.730-734.1984

[2]

Austin B, Garges S, Conrad B, Harding EE, Colwell RR, Simudu U, Taga N (1979) Comparative study of aerobic, heterotrophic bacteria flora of Chesapeake Bay and Tokyo Bay. Appl Environ Microbiol 37:704–714 10.1128/aem.37.4.704-714.1979

[3]

Bianchi MAG, Bianchi AJM (1982) Statistical sampling of bacterial strains and its use in bacterial diversity measurements. Microb Ecol 8:61–69. 10.1007/bf02011462

[4]

Brock TD (1987) The study of microorganisms in situ: Progress and problems. In: Ecology of microbial communities. Symposium 41. The Society for General Microbiology, Cambridge University Press, Cambridge, pp 1–17

[5]

Buchanan-Mappin JM, Wallis PM, Buchanan AG (1986) Enumeration and identification of heterotrophic bacteria in groundwater and in mountain stream. Can J Microbiol 32:93–98 10.1139/m86-020

[6]

Busse HJ, Auling G (1989) Evaluation of different approaches for identification of xenobiotic-degrading pseudomonads. Appl Environ Microbiol 55:1578–1583 10.1128/aem.55.6.1578-1583.1989

[7]

Dawson CW, Sneath PHA (1985) A probability matrix for identification of vibrios. J Appl Bacteriol 58:407–423 10.1111/j.1365-2672.1985.tb01480.x

[8]

Deutsche Einheitsverfahren zur Wasseruntersuchung (DEV) (1971) Mikrobiologische Verfahren Gruppe K5:1–8.

[9]

De Vos P, De Ley J (1983) Intra- and intergeneric similarities ofPseudomonas andXanthomonas ribosomal ribonucleic acid cistrons. Int J Syst Bacteriol 33:487–509 10.1099/00207713-33-3-487

[10]

Doetsch RN (1981) Determinative methods in light microscopy. In: Manual of methods for general microbiology, American Society for Microbiology, Washington, pp 21–33

[11]

Dott W, Thofern E (1982) Qualitative und quantitative Bestimmung von Bakterienpopulationen aus aquatischen Biotopen. 2. Mitteilung: Anwendung miniaturisierter Systeme zur Identifizierung und Biotypisierung von Bakterien unter Verwendung der Vielpunktbeimpfungsmethode. Zbl Bakt Hyg B 176:189–201

[12]

Dott W, Kämpfer P (1988) Biochemical methods for automated bacterial identification and testing metabolic activities in water and wastewater. Wat Sci Technol 20:221–227 10.2166/wst.1988.0288

[13]

Dott W, Trampisch HJ (1983) Qualitative und quantitative Bestimmung von Bakterienpopulationen aus aquatischen Biotopen. 5. Mitteilung: Vergleichende Untersuchungen an zwei Schnellsandfiltern. Zbl Bakt Hyg B 177:141–155

[14]

Feltham RKA, Sneath PHA (1982) Construction of matrices for computer assisted identification of aerobic gram-positive cocci. J Gen Microbiol 128:713–720

[15]

Fry JC, Zia T (1982) Viability of heterotrophic bacteria in freshwater. J Gen Microbiol 128:2841–2850

[16]

Ghiorse WC, Blackwill DL (1983) Enumeration and morphological characterization of bacteria indigenous to subsurface environments. Dev Ind Microbiol 24:213–224

[17]

Herbert D, Phipps PJ, Strange RE (1971) Chemical analysis of microbial cells. Methods in Microbiology 5B:209–344 10.1016/s0580-9517(08)70641-x

[18]

Hill LR, Lapage SP, Bowie IS (1978) Computer assisted identification of coryneform bacteria. In: Bousfield IJ, Callely AG (eds) Coryneform bacteria. Academic Press, London, pp 181–215

[19]

Hobbie JE, Daley RJ, Jasper S (1977) Use of Nuclepore filters for counting bacteria by fluorescence microscopy. Appl Env. Microbiol 33:1225–1228 10.1128/aem.33.5.1225-1228.1977

[20]

Holmes B, Hill LR (1985) Computers in diagnostic bacteriology, including identification. In: Goodfellow M, Jones D, Priest FG (eds) Computer assisted bacterial systematics, Academic Press, London, pp 265–287 10.1016/b978-0-12-289665-1.50016-2

[21]

Holmes B, Pinning CA, Dawson CA (1986) A probability matrix for the identification of gramnegative, aerobic, non-fermentative bacteria that grow on Nutrient-agar. J Gen Microbiol 132:1827–1842

[22]

Holmes B, Dawson CA, Pinning CA (1986) A revised probability matrix for the identification of gram-negative, aerobic rod shaped fermentative bacteria. J Gen Microbiol 132:3113–3135

[23]

Hugh R, Leifson E (1953) The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J Bacteriol 66:24–26 10.1128/jb.66.1.24-26.1953

[24]

Jones JG (1987) Diversity in freshwater microbiology. In Ecology of microbial communities. Symposium 41. The Society for General Microbiology. Cambridge University Press, Cambridge, pp 235–259

[25]

Kämpfer P, Dott W (1989) Evaluation of the Titertek-NF system for identification of gramnegative nonfermentative and oxidase-positive fermentative bacteria. J Clin Microbiol 27:1201–1205 10.1128/jcm.27.6.1201-1205.1989

[26]

Kämpfer P (1990) Evaluation of the Titertek-Enterobac-Automated system (TTE-AS) for identification of members of the family Enterobacteriaceae. Zbl Bakt 273:164–172 10.1016/s0934-8840(11)80244-6

[27]

Kölbel-Boelke J, Tienken B, Nehrkorn A (1988) Microbial communities in the saturated groundwater environment. I: Methods for isolation and characterization of heterotrophic bacteria. Microb Ecol 16:17–29 10.1007/bf02097402

[28]

Kölbel-Boelke J, Anders EM, Nehrkorn A (1988) Microbial communities in the saturated groundwater environment. II: Diversity of bacterial communities in a pleistocene sand aquifer and their in vitro activities. Microb Ecol 16:31–48 10.1007/bf02097403

[29]

Langham CD, Williams ST, Sneath PHA, Mortimer AM (1989) New probability matrices for identification ofStreptomyces. J Gen Microbiol 135:121–133

[30]

Lapage SP, Bascomb S, Willcox WR, Curtis MA (1973) Identification of bacteria by computer: General aspects and perspectives. J Gen Microbiol 77:273–299 10.1099/00221287-77-2-273

[31]

Logan N, Berkeley RCW (1984) Identification ofBacillus strains using the API system. J Gen Microbiol 130:1871–1882

[32]

Olsen RA, Bakken LR (1987) Viability of soil bacteria: Optimization of plate-counting technique and comparison between total counts and plate counts within different size groups. Microbial Ecol 13:59–74 10.1007/bf02014963

[33]

Overbeck J, Chrost RJ (1990) Aquatic microbial ecology. Springer-Verlag, Berlin Heidelberg New York 10.1007/978-1-4612-3382-4

[34]

The Analysis of Natural Microbial Populations by Ribosomal RNA Sequences

Norman R. Pace, David A. Stahl, David J. Lane et al.

Advances in Microbial Ecology 1986 10.1007/978-1-4757-0611-6_1

[35]

Parkes RJ (1987) Analysis of microbial communities within sediments using biomarkers. In: Ecology of microbial communities. Symposium 41. The Society of General Microbiology. Cambridge University Press, Cambridge, pp 147–177

[36]

Pfennig N, Lippert KD (1966) Über das Vitamin B12 Bedürfnis phototropher Schwefelbakterien. Arch Microbiol 55:245–256

[37]

Priest FG, Alexander B (1988) A frequency matrix for probabilistic identification of some bacilli. J Gen Microbiol 134:3011–3018

[38]

A new medium for the enumeration and subculture of bacteria from potable water

D J Reasoner, E E Geldreich

Applied and Environmental Microbiology 1985 10.1128/aem.49.1.1-7.1985

[39]

Smith GA, Nickels JS, Kerger BD, Davis JD, Collins SP (1985) Quantitative characterization of microbial biomass and community structure in subsurface material: A procaryotic consortium responsive to organic contamination. Can J Microbiol 32:104–111 10.1139/m86-022

[40]

Sneath PHA (1979) BASIC program for identification of an unknown with presence-absence data against an identification matrix of percent positive characters. Computers and Geosciences 5:195–213 10.1016/0098-3004(79)90005-0

[41]

Weller R, Ward DM (1989) Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA. Appl Env Microbiol 55:1818–1822 10.1128/aem.55.7.1818-1822.1989

[42]

Willcox WR, Lapage SP, Bascomb S, Curtis MA (1973) Identification of bacteria by computer: Theory and programming. J Gen Microbiol 77:317–330 10.1099/00221287-77-2-317

[43]

Willcox WR, Lapage SP, Holmes B (1980) A review of numerical methods in bacterial identification. Ant v Leeuwenhoek 46:233–299 10.1007/bf00453024

[44]

Williams ST, Goodfellow M, Wellington EMH, Vickers JC, Alderson G, Sneath PHA, Sackin MJ, Mortimer AM (1983) A probability matrix for identification of some streptomycetes. J Gen Microbiol 129:1815–1830

[45]

Wilson JT, McNabb JF, Blackwill DL, Ghiorse WC (1983) Enumeration and characterization of bacteria indigenous to a shallow watertable aquifer. Ground Water 21:134–142 10.1111/j.1745-6584.1983.tb00710.x

[46]

Wilson JT, McNabb JF, Wilson BH, Noonan NJ (1983) Biotransformation of selected organic pollutants in groundwater. Dev Ind Microbiol 24:225–233

Cited By

390

Proposal of Thorsellia kenyensis sp. nov. and Thorsellia kandunguensis sp. nov., isolated from larvae of Anopheles arabiensis, as members of the family Thorselliaceae fam. nov.

Peter Kämpfer, Stefanie P. Glaeser · 2015

International Journal of Systematic...

Description of Pseudochrobactrum kiredjianiae sp. nov.

Peter Kämpfer, Holger Scholz · 2007

International Journal of Systematic...

Description of Pseudochrobactrum gen. nov., with the two species Pseudochrobactrum asaccharolyticum sp. nov. and Pseudochrobactrum saccharolyticum sp. nov.

Peter Kämpfer, Ramon Rosselló-Móra · 2006

International Journal of Systematic...

Ottowia thiooxydans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov.

Stefan Spring, Udo Jäckel · 2004

International Journal of Systematic...

Metrics

390

Citations

46

References

Details

Published: Dec 01, 1991
Vol/Issue: 21(1)
Pages: 227-251
License: View

Authors

Cite This Article

Peter Kämpfer, Martin Steiof, Wolfgang Dott (1991). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microbial Ecology, 21(1), 227-251. https://doi.org/10.1007/bf02539156

Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria

You May Also Like