Soil microbiome: a key player for conservation of soil health under changing climate

Anamika Dubey; Muneer Ahmad Malla; Farhat Khan; Kanika Chowdhary; Shweta Yadav; Ashwani Kumar; Satyawati Sharma; Pramod K. Khare; Mohammad Latif Khan

doi:10.1007/s10531-019-01760-5

journal article Apr 04, 2019

Soil microbiome: a key player for conservation of soil health under changing climate

Anamika Dubey

Muneer Ahmad Malla Farhat Khan Kanika Chowdhary Shweta Yadav

Ashwani Kumar

Satyawati Sharma Pramod K. Khare Mohammad Latif Khan

Biodiversity and Conservation Vol. 28 No. 8-9 pp. 2405-2429 · Springer Science and Business Media LLC

View at Publisher Save 10.1007/s10531-019-01760-5

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References

189

[1]

A’Bear AD, Jones TH, Boddy L (2014) Potential impacts of climate change on interactions among saprotrophic cord-forming fungal mycelia and grazing soil invertebrates. Fungal Ecol 10:34–43. https://doi.org/10.1016/j.funeco.2013.01.009 10.1016/j.funeco.2013.01.009

[2]

Abhilash PC, Dubey RK, Tripathi V et al (2013) Remediation and management of POPs-contaminated soils in a warming climate: challenges and perspectives. Environ Sci Pollut Res 20:5879–5885. https://doi.org/10.1007/s11356-013-1808-5 10.1007/s11356-013-1808-5

[3]

Adler PB, Dalgleish HJ, Ellner SP (2012) Forecasting plant community impacts of climate variability and change: when do competitive interactions matter? J Ecol 100:478–487. https://doi.org/10.1111/j.1365-2745.2011.01930.x 10.1111/j.1365-2745.2011.01930.x

[4]

Agrawal AA, Weber MG (2015) On the study of plant defence and herbivory using comparative approaches: how important are secondary plant compounds. Ecol Lett 18:985–991. https://doi.org/10.1111/ele.12482 10.1111/ele.12482

[5]

Ahmad P, Kumar A, Ashraf M, Akram NA (2012) Salt-induced changes in photosynthetic activity and oxidative defense system of three cultivars of mustard (Brassica juncea L.). Afr J Biotechnol 11(11):2694–2703. https://doi.org/10.5897/AJB11.3203 10.5897/ajb11.3203

[6]

Ahmad P, Hameed A, Abd-Allah EF, Sheikh SA, Wani MR, Rasool S, Jamsheed S, Kumar A (2013) Biochemical and molecular approaches for drought tolerance in plants. In: Ahmad P, Wani MR (eds) Physiological mechanisms and adaptation strategies in plants under changing environment. Springer, New York, pp 1–29. https://doi.org/10.1007/978-1-4614-8600-8_1 10.1007/978-1-4614-8600-8_1

[7]

Aislabie J, Deslippe JR, Dymond JR (2013) Soil microbes and their contribution to soil services. In: Dymond JR (ed) Ecosystem services in New Zealand: conditions and trends. Manaaki Whenua Press, Lincoln, pp 143–161

[8]

Allende A, Monaghan J (2015) Irrigation water quality for leafy crops: a perspective of risks and potential solutions. Int J Environ Res Public Health. https://doi.org/10.3390/ijerph120707457 10.3390/ijerph120707457

[9]

Amundson R, Berhe AA, Hopmans JW et al (2015) Soil and human security in the 21st century. Science. https://doi.org/10.1126/science.1261071 10.1126/science.1261071

[10]

Auffret MD, Karhu K, Khachane A et al (2016) The role of microbial community composition in controlling soil respiration responses to temperature. PLoS ONE 11:e0165448. https://doi.org/10.1371/journal.pone.0165448 10.1371/journal.pone.0165448

[11]

Baetz U, Martinoia E (2014) Root exudates: the hidden part of plant defense. Trends Plant Sci 19:90–98. https://doi.org/10.1016/j.tplants.2013.11.006 10.1016/j.tplants.2013.11.006

[12]

Bagri DS, Upadhyaya DC, Kumar A, Upadhyaya CP (2018) Overexpression of PDX-II gene in potato (Solanum tuberosum L.) leads to the enhanced accumulation of vitamin B6 in tuber tissues and tolerance to abiotic stresses. Plant Sci 272:267–275. https://doi.org/10.1016/j.plantsci.2018.04.024 10.1016/j.plantsci.2018.04.024

[13]

THE ROLE OF ROOT EXUDATES IN RHIZOSPHERE INTERACTIONS WITH PLANTS AND OTHER ORGANISMS

Harsh P. Bais, Tiffany L. Weir, Laura G. Perry et al.

Annual Review of Plant Biology 2006 10.1146/annurev.arplant.57.032905.105159

[14]

Baldrian P (2017) Forest microbiome: diversity, complexity and dynamics. FEMS Microbiol Rev. https://doi.org/10.1093/femsre/fuw040 10.1093/femsre/fuw040

[15]

Baldrian P, Kolaiřík M, Štursová M et al (2012) Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME J. https://doi.org/10.1038/ismej.2011.95 10.1038/ismej.2011.95

[16]

Barant S, Radbata D, Oberweis D et al (2016) Abdominal necrotizing fasciitis after caesarean delivery. Rev Med Brux 37:178–182. https://doi.org/10.1126/science.1097396 10.1126/science.1097396

[17]

Bardgett RD, Van Der Putten WH (2014) Belowground biodiversity and ecosystem functioning. Nature 515:505–511. https://doi.org/10.1038/nature13855 10.1038/nature13855

[18]

The biomass distribution on Earth

Yinon M. Bar-On, Rob Phillips, Ron Milo

Proceedings of the National Academy of Sciences 2018 10.1073/pnas.1711842115

[19]

Bell CW, Asao S, Calderon F et al (2015) Plant nitrogen uptake drives rhizosphere bacterial community assembly during plant growth. Soil Biol Biochem 85:170–182. https://doi.org/10.1016/j.soilbio.2015.03.006 10.1016/j.soilbio.2015.03.006

[20]

Bell-Dereske L, Takacs-Vesbach C, Kivlin SN (2017) Leaf endophytic fungus interacts with precipitation to alter belowground microbial communities in primary successional dunes. FEMS Microbiol Ecol. https://doi.org/10.1093/femsec/fix036 10.1093/femsec/fix036

[21]

Bender SF, Wagg C, van der Heijden MGA (2016) An underground revolution: biodiversity and soil ecological engineering for agricultural sustainability. Trends Ecol Evol. https://doi.org/10.1016/j.tree.2016.02.016 10.1016/j.tree.2016.02.016

[22]

Berendsen RL, Pieterse CMJ, Bakker PAHM (2012) The rhizosphere microbiome and plant health. Trends Plant Sci 17:478–486. https://doi.org/10.1016/j.tplants.2012.04.001 10.1016/j.tplants.2012.04.001

[23]

Berg MP, Toby Kiers E, Driessen G et al (2010) Adapt or disperse: understanding species persistence in a changing world. Glob Change Biol 16:587–598. https://doi.org/10.1111/j.1365-2486.2009.02014.x 10.1111/j.1365-2486.2009.02014.x

[24]

Beutin L, Martin A (2012) Outbreak of Shiga toxin-producing Escherichia coli (STEC) O104:H4 infection in Germany causes a paradigm shift with regard to human pathogenicity of STEC strains. J Food Prot 75:408–418. https://doi.org/10.4315/0362-028X.JFP-11-452 10.4315/0362-028x.jfp-11-452

[25]

Preferential allocation, physio‐evolutionary feedbacks, and the stability and environmental patterns of mutualism between plants and their root symbionts

James D. Bever

New Phytologist 2015 10.1111/nph.13239

[26]

Bhogal P (2016) ORF_Issue_Brief_167_Small_Farmers. Observer Res Found

[27]

Bintanja R (2018) The impact of Arctic warming on increased rainfall. Sci Rep. https://doi.org/10.1038/s41598-018-34450-3 10.1038/s41598-018-34450-3

[28]

Blaser MJ, Cardon ZG, Cho MK et al (2016) Toward a predictive understanding of earth’s microbiomes to address 21st century challenges. MBio. https://doi.org/10.1128/mBio.00714-16 10.1128/mbio.00714-16

[29]

Bojko O, Kabala C (2017) Organic carbon pools in mountain soils—sources of variability and predicted changes in relation to climate and land use changes. CATENA. https://doi.org/10.1016/j.catena.2016.09.022 10.1016/j.catena.2016.09.022

[30]

Bonanomi G, Lorito M, Vinale F, Woo SL (2018) Organic amendments, beneficial microbes, and soil microbiota: toward a unified framework for disease suppression. Annu Rev Phytopathol 56:1–20. https://doi.org/10.1146/annurev-phyto-080615-100046 10.1146/annurev-phyto-080615-100046

[31]

Bradford MA, Davies CA, Frey SD et al (2008) Thermal adaptation of soil microbial respiration to elevated temperature. Ecol Lett 11:1316–1327. https://doi.org/10.1111/j.1461-0248.2008.01251.x 10.1111/j.1461-0248.2008.01251.x

[32]

Briones MJI, Mcnamara NP, Poskitt J et al (2014) Interactive biotic and abiotic regulators of soil carbon cycling: evidence from controlled climate experiments on peatland and boreal soils. Glob Chang Biol 20:2971–2982. https://doi.org/10.1111/gcb.12585 10.1111/gcb.12585

[33]

Brussaard L, de Ruiter PC, Brown GG (2007) Soil biodiversity for agricultural sustainability. Agric Ecosyst Environ. https://doi.org/10.1016/j.agee.2006.12.013 10.1016/j.agee.2006.12.013

[34]

Bulgarelli D, Schlaeppi K, Spaepen S et al (2013) Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838. https://doi.org/10.1146/annurev-arplant-050312-120106 10.1146/annurev-arplant-050312-120106

[35]

Busby PE, Soman C, Wagner MR et al (2017) Research priorities for harnessing plant microbiomes in sustainable agriculture. PLoS Biol 15:1–14. https://doi.org/10.1371/journal.pbio.2001793 10.1371/journal.pbio.2001793

[36]

Callaway E (2016) Devastating wheat fungus appears in Asia for first time. Nature 532:421–422. https://doi.org/10.1038/532421a 10.1038/532421a

[37]

Agricultural uses of plant biostimulants

Pamela Calvo, Louise Nelson, Joseph W. Kloepper

Plant and Soil 2014 10.1007/s11104-014-2131-8

[38]

Caporaso JG, Kuczynski J et al (2010) QIIME allows high throughput community sequencing data. Nat Methods 7:335–336. https://doi.org/10.1038/nmeth0510-335 10.1038/nmeth0510-335

[39]

Castro HF, Classen AT, Austin EE et al (2010) Soil microbial community responses to multiple experimental climate change drivers. Appl Environ Microbiol 76:999–1007. https://doi.org/10.1128/AEM.02874-09 10.1128/aem.02874-09

[40]

Castro HF, Classen AT, Austin EE et al (2012) Development and validation of a citrate synthase directed quantitative PCR marker for soil bacterial communities. Appl Soil Ecol 61:69–75. https://doi.org/10.1016/j.apsoil.2012.05.007 10.1016/j.apsoil.2012.05.007

[41]

Cavagnaro TR, Bender SF, Asghari HR, van der Heijden MGA (2015) The role of arbuscular mycorrhizas in reducing soil nutrient loss. Trends Plant Sci 20:283–290. https://doi.org/10.1016/j.tplants.2015.03.004 10.1016/j.tplants.2015.03.004

[42]

Ceuppens S, Johannessen GS, Allende A et al (2015) Risk factors for Salmonella, shiga toxin-producing Escherichia coli and Campylobacter occurrence in primary production of leafy greens and strawberries. Int J Environ Res Public Health. https://doi.org/10.3390/ijerph120809809 10.3390/ijerph120809809

[43]

Rhizosphere microbiome assemblage is affected by plant development

Jacqueline M Chaparro, Dayakar V Badri, Jorge M Vivanco

The ISME Journal 2014 10.1038/ismej.2013.196

[44]

Charubin K, Papoutsakis ET (2019) Direct cell-to-cell exchange of matter in a synthetic Clostridium syntrophy enables CO2 fixation, superior metabolite yields, and an expanded metabolic space. Metab Eng 52:9–19. https://doi.org/10.1016/j.ymben.2018.10.006 10.1016/j.ymben.2018.10.006

[45]

Chen X-P, Cui Z-L, Vitousek PM et al (2011) Integrated soil-crop system management for food security. Proc Natl Acad Sci USA 108:6399–6404. https://doi.org/10.1073/pnas.1101419108 10.1073/pnas.1101419108

[46]

Chen S, Zou J, Hu Z et al (2014) Global annual soil respiration in relation to climate, soil properties and vegetation characteristics: summary of available data. Agric For Meteorol 198:335–346. https://doi.org/10.1016/j.agrformet.2014.08.020 10.1016/j.agrformet.2014.08.020

[47]

Chen D, Cheng J, Chu P et al (2015a) Regional-scale patterns of soil microbes and nematodes across grasslands on the Mongolian plateau: relationships with climate, soil, and plants. Ecography (Cop) 38:622–631. https://doi.org/10.1111/ecog.01226 10.1111/ecog.01226

[48]

Chen Z, Yu G, Ge J et al (2015b) Roles of climate, vegetation and soil in regulating the spatial variations in ecosystem carbon dioxide fluxes in the Northern Hemisphere. PLoS ONE. https://doi.org/10.1371/journal.pone.0125265 10.1371/journal.pone.0125265

[49]

Chowdhary K, Sharma S (2017) Potential of fungal endophytes in plant growth and disease management. In: Singh D, Singh H, Prabha R (eds) Plant–microbe interactions in agro-ecological perspectives. Springer, Singapore, pp 275–290. https://doi.org/10.1007/978-981-10-5813-4_14 10.1007/978-981-10-5813-4_14

[50]

Chowdhary K, Kumar A, Sharma S, Pathak R, Jangir M (2018) Ocimum sp.: source of biorational pesticides. Ind Crops Prod 122:686–701. https://doi.org/10.1016/j.indcrop.2018.05.068 10.1016/j.indcrop.2018.05.068

Showing 50 of 189 references

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References

Details

Published: Apr 04, 2019
Vol/Issue: 28(8-9)
Pages: 2405-2429
License: View

Authors

Funding

Department of Biotechnology , Ministry of Science and Technology Award: BT/PR12899/NDB/39/506/2015

Cite This Article

Anamika Dubey, Muneer Ahmad Malla, Farhat Khan, et al. (2019). Soil microbiome: a key player for conservation of soil health under changing climate. Biodiversity and Conservation, 28(8-9), 2405-2429. https://doi.org/10.1007/s10531-019-01760-5

Soil microbiome: a key player for conservation of soil health under changing climate

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