Effects of feed ration and temperature on Chinook salmon (Oncorhynchus tshawytscha) microbiota in freshwater recirculating aquaculture systems

Ruixiang Zhao; Jane E. Symonds; Seumas P. Walker; Konstanze Steiner; Chris G. Carter; John P. Bowman; Barbara F. Nowak

doi:10.1016/j.aquaculture.2021.736965

journal article Oct 01, 2021

Effects of feed ration and temperature on Chinook salmon (Oncorhynchus tshawytscha) microbiota in freshwater recirculating aquaculture systems

Ruixiang Zhao Jane E. Symonds Seumas P. Walker Konstanze Steiner Chris G. Carter

John P. Bowman

Barbara F. Nowak

Aquaculture Vol. 543 pp. 736965 · Elsevier BV

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References

71

[1]

Anderson (2014)

[2]

Anderson "Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology" Ecology. (2003) 10.1890/0012-9658(2003)084[0511:caopca]2.0.co;2

[3]

Angelakis "Weight gain by gut microbiota manipulation in productive animals" Microb. Pathog. (2017) 10.1016/j.micpath.2016.11.002

[4]

Aravindraja "Ultradeep 16S rRNA sequencing analysis of geographically similar but diverse unexplored marine samples reveal varied bacterial community composition" PLoS One (2013) 10.1371/journal.pone.0076724

[5]

Aronesty (2011)

[6]

Attramadal "Recirculation as a possible microbial control strategy in the production of marine larvae" Aquac. Eng. (2012) 10.1016/j.aquaeng.2011.10.003

[7]

RAS and microbial maturation as tools for K-selection of microbial communities improve survival in cod larvae

Kari J.K. Attramadal, Thi My Hanh Truong, Ingrid Bakke et al.

Aquaculture 2014 10.1016/j.aquaculture.2014.05.052

[8]

Baumgarner "Proteomic analysis of rainbow trout (Oncorhynchus mykiss) intestinal epithelia: physiological acclimation to short-term starvation" Comp. Biochem. Physiol. Part D: Genom. Proteome. (2013)

[9]

Belsare "Feeding ration and frequency influences growth, feed utilization and body composition of goldfish (Carassius auratus)" Indian J. Anim. Res. (2019)

[10]

Betiku "Water system is a controlling variable modulating bacterial diversity of gastrointestinal tract and performance in rainbow trout" PLoS One (2018) 10.1371/journal.pone.0195967

[11]

Bacterial community analysis of marine recirculating aquaculture system bioreactors for complete nitrogen removal established from a commercial inoculum

Marina Brailo, Harold J. Schreier, Ryan McDonald et al.

Aquaculture 2019 10.1016/j.aquaculture.2018.12.078

[12]

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

Alison Buchan, Gary R. LeCleir, Christopher A. Gulvik et al.

Nature Reviews Microbiology 2014 10.1038/nrmicro3326

[13]

Buddington "The intestines of carnivorous fish: structure and functions and the relations with diet" Acta Physiol. Scand. Suppl. (1997)

[14]

Butt "Gut microbiota and energy homeostasis in fish" Front. Endocrinol. (2019) 10.3389/fendo.2019.00009

[15]

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

J Gregory Caporaso, Christian L Lauber, William A Walters et al.

The ISME Journal 2012 10.1038/ismej.2012.8

[16]

Fermented Soybean Meal Increases Lactic Acid Bacteria in Gut Microbiota of Atlantic Salmon (Salmo salar)

Natalia Catalán, Alejandro Villasante, Jurij Wacyk et al.

Probiotics and Antimicrobial Proteins 2018 10.1007/s12602-017-9366-7

[17]

Ciric "Characterization of mid-intestinal microbiota of farmed Chinook salmon using 16S rRNA gene metabarcoding" Arch. Biol. Sci. (2019) 10.2298/abs190402040c

[18]

Farming different species in RAS in Nordic countries: Current status and future perspectives

Johanne Dalsgaard, Ivar Lund, Ragnheidur Thorarinsdottir et al.

Aquacultural Engineering 2013 10.1016/j.aquaeng.2012.11.008

[19]

Gut Microbiota Dysbiosis in Human Obesity: Impact of Bariatric Surgery

Jean Debédat, Karine Clément, Judith Aron-Wisnewsky

Current Obesity Reports 2019 10.1007/s13679-019-00351-3

[20]

Dehler "Environmental and physiological factors shape the gut microbiota of Atlantic salmon parr (Salmo salar L.)" Aquaculture (2017) 10.1016/j.aquaculture.2016.07.017

[21]

Del’Duca "Variability of the nitrifying bacteria in the biofilm and water column of a recirculating aquaculture system for tilapia (Oreochromis niloticus) production" Aquac. Res. (2019) 10.1111/are.14211

[22]

Figge "Photobacterium piscicola sp. nov., isolated from marine fish and spoiled packed cod" Syst. Appl. Microbiol. (2014) 10.1016/j.syapm.2014.05.003

[23]

Gajardo "A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): a basis for comparative gut microbial research" Sci. Rep. (2016) 10.1038/srep30893

[24]

Gatesoupe "Intestinal microbiota in rainbow trout, Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: a correlative approach with some plasma metabolites" Aquac. Nutr. (2018) 10.1111/anu.12793

[25]

Ghanbari "A new view of the fish gut microbiome: advances from next-generation sequencing" Aquaculture. (2015) 10.1016/j.aquaculture.2015.06.033

[26]

Giatsis (2015)

[27]

Hatje "Population dynamics of Vibrio and Pseudomonas species isolated from farmed Tasmanian Atlantic Salmon (Salmo salar L.): a seasonal study" Microb. Ecol. (2014) 10.1007/s00248-014-0462-x

[28]

He "Population-specific responses to interspecific competition in the gut microbiota of two Atlantic Salmon (Salmo salar) populations" Microb. Ecol. (2018) 10.1007/s00248-017-1035-6

[29]

Huber "Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure" Environ. Microbiol. (2009) 10.1111/j.1462-2920.2008.01857.x

[30]

Huyben "Dietary live yeast and increased water temperature influence the gut microbiota of rainbow trout" J. Appl. Microbiol. (2018) 10.1111/jam.13738

[31]

Ingerslev "The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type" Aquaculture (2014) 10.1016/j.aquaculture.2013.12.032

[32]

Jin "Polystyrene microplastics induce microbiota dysbiosis and inflammation in the gut of adult zebrafish" Environ. Pollut. (2018) 10.1016/j.envpol.2017.12.088

[33]

The growth of finfish in global open-ocean aquaculture under climate change

Dane H. Klinger, Simon A. Levin, James R. Watson

Proceedings of the Royal Society of London. Series... 2017 10.1098/rspb.2017.0834

[34]

Nonmetric Multidimensional Scaling: A Numerical Method

J. B. Kruskal

Psychometrika 1964 10.1007/bf02289694

[35]

Le "Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects" Sci. Rep. (2020) 10.1038/s41598-020-64570-8

[36]

Legrand "A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome" Rev. Aquac. (2020) 10.1111/raq.12375

[37]

Liu "Periodic bacterial control with peracetic acid in a recirculating aquaculture system and its long-term beneficial effect on fish health" Aquaculture. (2018) 10.1016/j.aquaculture.2017.11.050

[38]

Llewellyn "The biogeography of the Atlantic salmon (Salmo salar) gut microbiome" ISME J. (2016) 10.1038/ismej.2015.189

[39]

López Nadal "Feed, microbiota, and gut immunity: using the zebrafish model to understand fish health" Front. Immunol. (2020) 10.3389/fimmu.2020.00114

[40]

UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

Catherine Lozupone, Rob Knight

Applied and Environmental Microbiology 2005 10.1128/aem.71.12.8228-8235.2005

[41]

Minich "Microbial ecology of Atlantic salmon (Salmo salar) hatcheries: impacts of the built environment on fish mucosal microbiota" Appl. Environ. Microbiol. (2020) 10.1128/aem.00411-20

[42]

Miyake "Diet strongly influences the gut microbiota of surgeonfishes" Mol. Ecol. (2015) 10.1111/mec.13050

[43]

Neuman "The effect of diet and environmental temperature on the faecal microbiota of farmed Tasmanian Atlantic Salmon (Salmo salar L.)" Aquac. Res. (2016) 10.1111/are.12522

[44]

Neuman "The effect of fishmeal inclusion and prebiotic supplementation on the hindgut faecal microbiota of farmed Tasmanian Atlantic salmon (Salmo salar L.)" J. Appl. Microbiol. (2018) 10.1111/jam.13930

[45]

Nguyen "Atlantic Salmon (Salmo salar L., 1758) Gut microbiota profile correlates with flesh pigmentation: cause or effect?" Mar. Biotechnol. (NY) (2020)

[46]

Niu "Effects of dietary multi-strain probiotics supplementation in a low fishmeal diet on growth performance, nutrient utilization, proximate composition, immune parameters, and gut microbiota of juvenile olive flounder (Paralichthys olivaceus)" Fish & Shellfish Immunol. (2019) 10.1016/j.fsi.2019.07.056

[47]

O'Donnell "Detection of pseudodiarrhoea by simple clinical assessment of intestinal transit rate" BMJ (1990) 10.1136/bmj.300.6722.439

[48]

Rawls "Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota" Proc. Natl. Acad. Sci. (2004) 10.1073/pnas.0400706101

[49]

Ringø "Probiotics, lactic acid bacteria and bacilli: interesting supplementation for aquaculture" J. Appl. Microbiol. (2020) 10.1111/jam.14628

[50]

Deep-sequencing of the bacterial microbiota in commercial-scale recirculating and semi-closed aquaculture systems for Atlantic salmon post-smolt production

Ida Rud, Jelena Kolarevic, Astrid Buran Holan et al.

Aquacultural Engineering 2017 10.1016/j.aquaeng.2016.10.003

Showing 50 of 71 references

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Published: Oct 01, 2021
Vol/Issue: 543
Pages: 736965
License: View

Authors

R

Ruixiang Zhao

Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, No. 422, Southern Siming Road, Xiamen 361005, China

Cite This Article

Ruixiang Zhao, Jane E. Symonds, Seumas P. Walker, et al. (2021). Effects of feed ration and temperature on Chinook salmon (Oncorhynchus tshawytscha) microbiota in freshwater recirculating aquaculture systems. Aquaculture, 543, 736965. https://doi.org/10.1016/j.aquaculture.2021.736965

Effects of feed ration and temperature on Chinook salmon (Oncorhynchus tshawytscha) microbiota in freshwater recirculating aquaculture systems

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