journal article Jun 01, 2006

Voltage-dependent energetics of alamethicin monomers in the membrane

Biophysical Chemistry Vol. 122 No. 1 pp. 50-57 · Elsevier BV
View at Publisher Save 10.1016/j.bpc.2006.02.005
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References
47
[1]
Sansom "The biophysics of peptide models of ion channels" Prog. Biophys. Mol. Biol. (1991) 10.1016/0079-6107(91)90004-c
[2]
Cafiso "Alamethicin: a peptide model for voltage gating and protein membrane interactions" Annu. Rev. Biophys. Biomol. Struct. (1994) 10.1146/annurev.bb.23.060194.001041
[3]
Fox "A voltage-gated ion channel model inferred from the crystal structure of alamethicin at 1.5 A resolution" Nature (1982) 10.1038/300325a0
[4]
Banerjee "Interaction of alamethicin with lecithin bilayers: a 31P and 2H NMR study" Biochemistry (1985) 10.1021/bi00347a019
[5]
North "Membrane orientation of the N-terminal segment of alamethicin determined by solid-state 15N NMR" Biophys. J. (1995) 10.1016/s0006-3495(95)80108-6
[6]
Huang "Lipid–alamethicin interactions influence alamethicin orientation" Biophys. J. (1991) 10.1016/s0006-3495(91)82144-0
[7]
Sansom "Ion channels formed by amphipathic helical peptides, a molecular modeling study" Eur. Biophys. J. (1991) 10.1007/bf00183460
[8]
Duclohier "Voltage-dependent pore formation and antimicrobial activity by alamethicin and analogues" J. Membr. Biol. (2001) 10.1007/s00232-001-0077-2
[9]
Sansom "The mechanism of channel formation by alamethicin as viewed by molecular dynamics simulations" Novartis Found. Symp. (1999)
[10]
Sansom "Molecular dynamics simulation of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2" Biochem. Soc. Trans. (1998) 10.1042/bst0260438
[11]
Tieleman "Surface binding of alamethicin stabilizes its helical structure: molecular dynamics simulations" Biophys. J. (1999) 10.1016/s0006-3495(99)77470-9
[12]
Tieleman "An alamethicin channel in a lipid bilayer: molecular dynamics simulations" Biophys. J. (1999) 10.1016/s0006-3495(99)77337-6
[13]
Tieleman "Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces" Biophys. J. (2001) 10.1016/s0006-3495(01)76018-3
[14]
Tieleman "Understanding pH dependent selectivity of alamethicin K18 channels by computer simulation" Biophys. J. (2003) 10.1016/s0006-3495(03)74959-5
[15]
Tieleman "Alamethicin channels in membrane: molecular dynamics simulations" Faraday Discuss. (1998) 10.1039/a806266h
[16]
Tieleman "Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations" Biochemistry (1998) 10.1021/bi981802y
[17]
Tieleman "Analysis and evaluation of channel models: simulations of alamethicin" Biophys. J. (2002) 10.1016/s0006-3495(02)75253-3
[18]
Tieleman "Alamethicin helices in a bilayer and in solution: molecular dynamics simulations" Biophys. J. (1999) 10.1016/s0006-3495(99)77176-6
[19]
Kessel "Continuum solvent model calculations of alamethicin–membrane interactions: thermodynamic aspects" Biophys. J. (2000) 10.1016/s0006-3495(00)76617-3
[20]
Effective energy function for proteins in lipid membranes

Themis Lazaridis

Proteins: Structure, Function, and Bioinformatics 2003 10.1002/prot.10410
[21]
Effective energy function for proteins in solution

Themis Lazaridis, Martin Karplus

Proteins: Structure, Function, and Bioinformatics 1999 10.1002/(sici)1097-0134(19990501)35:2<133::aid-prot1>3.0.co;2-n
[22]
"New View" of Protein Folding Reconciled with the Old Through Multiple Unfolding Simulations

Themis Lazaridis, Martin Karplus

Science 1997 10.1126/science.278.5345.1928
[23]
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson et al.

Journal of Computational Chemistry 1983 10.1002/jcc.540040211
[24]
Simulation of activation free energies in molecular systems

Eyal Neria, Stefan Fischer, Martin Karplus

The Journal of Chemical Physics 1996 10.1063/1.472061
[25]
Lazaridis "Thermodynamics of protein folding: a microscopic view" Biophys. Chem. (2003) 10.1016/s0301-4622(02)00293-4
[26]
Potentials of Mean Force between Ionizable Amino Acid Side Chains in Water

Artëm Masunov, Themis Lazaridis

Journal of the American Chemical Society 2003 10.1021/ja025521w
[27]
Experimentally determined hydrophobicity scale for proteins at membrane interfaces

William C. Wimley, Stephen H. White

Nature Structural &amp; Molecular Biology 1996 10.1038/nsb1096-842
[29]
Weiner "Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data II. Distribution and packing of terminal methyl groups" Biophys. J. (1992) 10.1016/s0006-3495(92)81848-9
[30]
Implicit solvent simulations of peptide interactions with anionic lipid membranes

Themis Lazaridis

Proteins: Structure, Function, and Bioinformatics 2005 10.1002/prot.20358
[31]
Lazaridis "Structural determinants of transmembrane beta-barrels" J. Chem. Theory Comput. (2005) 10.1021/ct050055x
[32]
Influence of the membrane potential on the free energy of an intrinsic protein

B. Roux

Biophysical Journal 1997 10.1016/s0006-3495(97)78327-9
[33]
Stankowski "Lipid dependence of peptide–membrane interactions" FEBS Lett. (1989) 10.1016/0014-5793(89)80795-1
[34]
Biggin "Simulation studies of alamethicin bilayer interactions" Biophys. J. (1997) 10.1016/s0006-3495(97)78701-0
[35]
Schwarz "Thermodynamic analysis of incorporation and aggregation in a membrane: application to the pore-forming peptide alamethicin" Biochim. Biophys. Acta (1986) 10.1016/0005-2736(86)90412-8
[36]
Chen "Sigmoidal concentration dependence of antimicrobial peptide activities: a case study on alamethicin" Biophys. J. (2002) 10.1016/s0006-3495(02)75452-0
[37]
Barranger-Mathys "Membrane structure of voltage-gated channel forming peptides by site-directed spin-labeling" Biochemistry (1996) 10.1021/bi951985d
[38]
Bak "Conformation of alamethicin in oriented phospholipid bilayers by 15N solid-state nuclear magnetic resonance" Biophys. J. (2001) 10.1016/s0006-3495(01)75822-5
[39]
Dave "Interaction of alamethicin with ether-linked phospholipid bilayers: oriented circular dichroism, 31P solid-state NMR, and differential scanning calorimetry studies" Biophys. J. (2005) 10.1529/biophysj.105.067678
[40]
Bechinger "15N and 31P solid-state NMR investigations on the orientation of zervamicin II and alamethicin in phosphatidylcholine membranes" Biochemistry (2001) 10.1021/bi010162n
[41]
Chen "Evidence for membrane thinning effect as the mechanism for peptide-induced pore formation" Biophys. J. (2003) 10.1016/s0006-3495(03)75103-0
[42]
Lewis "Correlation between the free energy of a channel-forming voltage gated peptide and the spontaneous curvature of bilayer lipids" Biochemistry (1999) 10.1021/bi9828167
[43]
Bransburg-Zabary "Stability of an ion channel in lipid bilayers: implicit solvent model calculations with gramicidin" Biochemistry (2002) 10.1021/bi0120704
[44]
Vodyanoy "Alamethicin-induced current–voltage curve asymmetry in lipid bilayers" Biophys. J. (1983) 10.1016/s0006-3495(83)84370-7
[45]
Molle "Ion channel stabilization of synthetic alamethicin analogs by rings of inter-helix h-bonds" Biophys. J. (1996) 10.1016/s0006-3495(96)79729-1
[46]
Kessel "Implicit solvent model estimates the stability of model structures of the alamethicin channel" Eur. Biophys. J. (2004) 10.1007/s00249-003-0345-4
[47]
Huang "Deformation free energy of bilayer membrane and its effect on gramicidin channel lifetime" Biophys. J. (1986) 10.1016/s0006-3495(86)83550-0
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