journal article Aug 01, 2024

Land use intensification homogenizes soil protist communities and alters their diversity across Europe

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References
88
[1]
Allan (2014)
[2]
Multivariate dispersion as a measure of beta diversity

Marti J. Anderson, Kari E. Ellingsen, Brian H. McArdle

Ecology Letters 2006 10.1111/j.1461-0248.2006.00926.x
[3]
Archidona-Yuste "Agriculture causes homogenization of plant-feeding nematode communities at the regional scale" Journal of Applied Ecology (2021) 10.1111/1365-2664.14025
[4]
Structure and function of the global topsoil microbiome

Mohammad Bahram, Falk Hildebrand, Sofia K. Forslund et al.

Nature 2018 10.1038/s41586-018-0386-6
[5]
Banerjee "Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe" Nature Communications (2024) 10.1038/s41467-023-44073-6
[6]
Bartoń "MuMIn: multi-model inference" R Package (2022)
[7]
Diversity and ecology of protists revealed by metabarcoding

Fabien Burki, Miguel M. Sandin, Mahwash Jamy

Current Biology 2021 10.1016/j.cub.2021.07.066
[9]
Daru "Widespread homogenization of plant communities in the Anthropocene" Nature Communications (2021) 10.1038/s41467-021-27186-8
[10]
de Carvalho "Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria" Ecology (2016) 10.1002/ecy.1513
[11]
de Graaff "Effects of agricultural intensification on soil biodiversity and implications for ecosystem functioning: a meta-analysis" Advances in Agronomy (2019) 10.1016/bs.agron.2019.01.001
[12]
Delgado-Baquerizo "Global homogenization of the structure and function in the soil microbiome of urban greenspaces" Science Advances (2021) 10.1126/sciadv.abg5809
[13]
Delgado-Baquerizo "Multiple elements of soil biodiversity drive ecosystem functions across biomes" Nature Ecology & Evolution (2020) 10.1038/s41559-019-1084-y
[14]
Denelle "Generalist plants are more competitive and more functionally similar to each other than specialist plants: insights from network analyses" Journal of Biogeography (2020) 10.1111/jbi.13848
[15]
Dray (2013)
[16]
UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar, Brian J. Haas, Jose C. Clemente et al.

Bioinformatics 2011 10.1093/bioinformatics/btr381
[17]
WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas

Stephen E. Fick, ROBERT J. HIJMANS

International Journal of Climatology 2017 10.1002/joc.5086
[18]
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

Noah Fierer, Christian L Lauber, Kelly S. Ramirez et al.

The ISME Journal 2012 10.1038/ismej.2011.159
[19]
Fitzpatrick (2022)
[20]
Foissner "Protozoa as bioindicators in agroecosystems, with emphasis on farming practices, biocides, and biodiversity" Agriculture, Ecosystems & Environment (1997) 10.1016/s0167-8809(96)01142-5
[21]
Global Consequences of Land Use

Jonathan A. Foley, Ruth DeFries, Gregory P. Asner et al.

Science 2005 10.1126/science.1111772
[22]
Frishkoff "Loss of avian phylogenetic diversity in neotropical agricultural systems" Science (2014) 10.1126/science.1254610
[23]
Gámez-Virués "Landscape simplification filters species traits and drives biotic homogenization" Nature Communications (2015) 10.1038/ncomms9568
[24]
Protists: Puppet Masters of the Rhizosphere Microbiome

Zhilei Gao, Ida Karlsson, Stefan Geisen et al.

Trends in Plant Science 2019 10.1016/j.tplants.2018.10.011
[25]
Soil protists: a fertile frontier in soil biology research

Stefan Geisen, Edward A. D. Mitchell, Sina Adl et al.

FEMS Microbiology Reviews 2018 10.1093/femsre/fuy006
[26]
Geisen "Challenges and opportunities for soil biodiversity in the anthropocene" Current Biology (2019) 10.1016/j.cub.2019.08.007
[27]
George "Evaluation of mesofauna communities as soil quality indicators in a national-level monitoring programme" Soil Biology and Biochemistry (2017) 10.1016/j.soilbio.2017.09.022
[28]
George "Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems" Nature Communications (2019) 10.1038/s41467-019-09031-1
[29]
Gossner "Land-use intensification causes multitrophic homogenization of grassland communities" Nature (2016) 10.1038/nature20575
[30]
Global projections of the soil microbiome in the Anthropocene

Carlos A. Guerra, Manuel Delgado‐Baquerizo, Eliana Duarte et al.

Global Ecology and Biogeography 2021 10.1111/geb.13273
[31]
Lambda: the local aligner for massive biological data

Hannes Hauswedell, Jochen Singer, Knut Reinert

Bioinformatics 2014 10.1093/bioinformatics/btu439
[32]
Hildebrand "LotuS: an efficient and user-friendly OTU processing pipeline" Microbiome (2014)
[33]
Ho "Revisiting life strategy concepts in environmental microbial ecology" FEMS Microbiology Ecology (2017) 10.1093/femsec/fix006
[34]
Jesus "Changes in land use alter the structure of bacterial communities in Western Amazon soils" ISME Journal (2009) 10.1038/ismej.2009.47
[35]
Karp "Intensive agriculture erodes β-diversity at large scales" Ecology Letters (2012) 10.1111/j.1461-0248.2012.01815.x
[36]
Kasper (2018)
[37]
Ecosystem type drives soil eukaryotic diversity and composition in Europe

Julia Köninger, Cristiano Ballabio, Panos Panagos et al.

Global Change Biology 2023 10.1111/gcb.16871
[38]
Labouyrie "Patterns in soil microbial diversity across Europe" Nature Communications (2023) 10.1038/s41467-023-37937-4
[39]
Le Provost "Contrasting responses of above-and belowground diversity to multiple components of land-use intensity" Nature Communications (2021) 10.1038/s41467-021-23931-1
[40]
Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

Jonathan W. Leff, Stuart E. Jones, Suzanne M. Prober et al.

Proceedings of the National Academy of Sciences 2015 10.1073/pnas.1508382112
[41]
Levins (1968)
[42]
Li "Land-use change alters patterns of soil biodiversity in arid lands of northwestern China" Plant and Soil (2018) 10.1007/s11104-018-3673-y
[43]
Li "Management effects on soil nematode abundance differ among functional groups and land-use types at a global scale" Journal of Animal Ecology (2022) 10.1111/1365-2656.13744
[44]
Li "Agriculture erases climate constraints on soil nematode communities across large spatial scales" Global Change Biology (2020) 10.1111/gcb.14821
[45]
Liddicoat "Can bacterial indicators of a grassy woodland restoration inform ecosystem assessment and microbiota-mediated human health?" Environment International (2019) 10.1016/j.envint.2019.05.011
[46]
Männistö "Do shifts in life strategies explain microbial community responses to increasing nitrogen in tundra soil?" Soil Biology and Biochemistry (2016) 10.1016/j.soilbio.2016.02.012
[47]
Marcacci "Taxonomic and functional homogenization of farmland birds along an urbanization gradient in a tropical megacity" Global Change Biology (2021) 10.1111/gcb.15755
[48]
McKnight "Methods for normalizing microbiome data: an ecological perspective" Methods in Ecology and Evolution (2019) 10.1111/2041-210x.13115
[49]
Minasny "A conditioned Latin hypercube method for sampling in the presence of ancillary information" Computers & Geosciences (2006) 10.1016/j.cageo.2005.12.009
[50]
Moora "Anthropogenic land use shapes the composition and phylogenetic structure of soil arbuscular mycorrhizal fungal communities" FEMS Microbiology Ecology (2014) 10.1111/1574-6941.12420

Showing 50 of 88 references

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