journal article Open Access Mar 27, 2026

Hydropathy Landscapes of Histone–DNA Interactions in Chromatin Building Blocks

View at Publisher Save 10.1021/acs.jpcb.6c00520
Topics

No keywords indexed for this article. Browse by subject →

References
62
[1]
The language of covalent histone modifications

Brian D. Strahl, C. David Allis

Nature 10.1038/47412
[2]
From Nucleosomes to Compartments: Physicochemical Interactions Underlying Chromatin Organization

Shuming Liu, Advait Athreya, Zhuohan Lao et al.

Annual Review of Biophysics 10.1146/annurev-biophys-030822-032650
[3]
Always on the Move: Overview on Chromatin Dynamics within Nuclear Processes

Charlotte M. Delvaux de Fenffe, Jolijn Govers, Francesca Mattiroli

Biochemistry 10.1021/acs.biochem.5c00114
[4]
Crystal structure of the nucleosome core particle at 2.8 Å resolution

Karolin Luger, Armin W. Mäder, Robin K. Richmond et al.

Nature 10.1038/38444
[8]
Water Dynamics in the Hydration Shells of Biomolecules

Damien Laage, Thomas Elsaesser, James T. Hynes

Chemical Reviews 10.1021/acs.chemrev.6b00765
[10]
Nucleosome Structure and Function

Robert K. McGinty, Song Tan

Chemical Reviews 10.1021/cr500373h
[11]
Euchromatin and Heterochromatin: Implications for DNA Accessibility and Transcription

Katsuhiko Minami, Adilgazy Semeigazin, Kako Nakazato et al.

Journal of Molecular Biology 10.1016/j.jmb.2025.169270
[21]
The Biology of Chromatin Remodeling Complexes

Cedric R. Clapier, Bradley R. Cairns

Annual Review of Biochemistry 10.1146/annurev.biochem.77.062706.153223
[22]
Rapid spontaneous accessibility of nucleosomal DNA

Gu Li, Marcia Levitus, Carlos Bustamante et al.

Nature Structural & Molecular Biology 10.1038/nsmb869
[30]
Structure and Dynamics of the TIP3P, SPC, and SPC/E Water Models at 298 K

Pekka Mark, Lennart Nilsson

The Journal of Physical Chemistry A 10.1021/jp003020w
[32]
Canonical sampling through velocity rescaling

Giovanni Bussi, Davide Donadio, Michele Parrinello

The Journal of Chemical Physics 10.1063/1.2408420
[33]
Molecular dynamics with coupling to an external bath

H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren et al.

The Journal of Chemical Physics 10.1063/1.448118
[34]
Polymorphic transitions in single crystals: A new molecular dynamics method

M. Parrinello, A. Rahman

Journal of Applied Physics 10.1063/1.328693
[35]
Schrodinger, L. L. C. The PyMOL Molecular Graphics System , Version 1.8, 2015.
[36]
Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Andrew M. Waterhouse, James B. Procter, David M. A. Martin et al.

Bioinformatics 10.1093/bioinformatics/btp033
[37]
Accurate structure prediction of biomolecular interactions with AlphaFold 3

Josh Abramson, Jonas Adler, Jack Dunger et al.

Nature 10.1038/s41586-024-07487-w

Showing 50 of 62 references

Metrics
0
Citations
62
References
Details
Published
Mar 27, 2026
Vol/Issue
130(14)
Pages
3844-3854
License
View
Funding
Division of Materials Research Award: DMR-XC- 2049793
Division of Molecular and Cellular Biosciences Award: MCB-2221796
Cite This Article
Ratnakshi Mandal, Andre Christophe Noel, Anna M. Baur, et al. (2026). Hydropathy Landscapes of Histone–DNA Interactions in Chromatin Building Blocks. The Journal of Physical Chemistry B, 130(14), 3844-3854. https://doi.org/10.1021/acs.jpcb.6c00520