journal article Jul 13, 2007

How Do Trehalose, Maltose, and Sucrose Influence Some Structural and Dynamical Properties of Lysozyme? Insight from Molecular Dynamics Simulations

View at Publisher Save 10.1021/jp071946z
Topics

No keywords indexed for this article. Browse by subject →

References
74
[1]
Franks F. (1985)
[2]
Crowe J. H. Cryobiology (2001) 10.1006/cryo.2001.2353
[3]
Instability, stabilization, and formulation of liquid protein pharmaceuticals

Wei Wang

International Journal of Pharmaceutics 1999 10.1016/s0378-5173(99)00152-0
[4]
Haydon C. SPC, Soap, Perfurm., Cosmet. (2000)
[5]
Lyophilization and development of solid protein pharmaceuticals

Wei Wang

International Journal of Pharmaceutics 2000 10.1016/s0378-5173(00)00423-3
[6]
Crowe J. H. Annu. Rev. Physiol. (1998) 10.1146/annurev.physiol.60.1.73
[7]
Patist A. Colloids Surf., B (2005) 10.1016/j.colsurfb.2004.05.003
[8]
Watanabe M. Appl. Entomol. Zool. (2006) 10.1303/aez.2006.15
[9]
Carpenter J. F. Biochemistry (1989) 10.1021/bi00435a044
[10]
Petrelski S. J. Biophys. J. (1993)
[11]
Allison S. D. Arch. Biochem. Biophys. (1999) 10.1006/abbi.1999.1175
[12]
Lins, R. D.; Pereira, C. S.; Hünenberger, P. H.Proteins:  Struct., Funct.Bioinf.2004,55, 177−186. 10.1002/prot.10632
[13]
Cottone, G.; Giuffrida, S.; Ciccotti, G.; Cordone, L.Proteins:  Struct.Funct., Bioinf.2005,59, 291−302. 10.1002/prot.20414
[14]
Dirama T. E. J. Chem. Phys. (2006) 10.1063/1.2159471
[15]
Taga T. Acta Crystallogr. (1972) 10.1107/s0567740872007824
[16]
Gress M. E. Acta Crystallogr. (1977)
[17]
Brown G. M. Acta Crystallogr. (1973) 10.1107/s0567740873003365
[18]
VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten

Journal of Molecular Graphics 1996 10.1016/0263-7855(96)00018-5
[19]
Timasheff S. (1995)
[20]
Why Is Trehalose an Exceptional Protein Stabilizer?

Jai K. Kaushik, Rajiv Bhat

Journal of Biological Chemistry 2003 10.1074/jbc.m300815200
[21]
Xie G. Biophys. Chem. (1997)
[22]
Timasheff S. N. Biochemistry (2002) 10.1021/bi020316e
[23]
Branca C. J. Phys. Chem. B (2001) 10.1021/jp010179f
[24]
Furuki T. Carbohydr. Res. (2002) 10.1016/s0008-6215(01)00332-9
[25]
Branca C. J. Chem. Phys. (1999) 10.1063/1.479288
[26]
Hoekstra F. A. Trends Plant Sci. (2001) 10.1016/s1360-1385(01)02052-0
[27]
Green J. L. J. Phys. Chem. (1989)
[28]
Fast Dynamics and Stabilization of Proteins: Binary Glasses of Trehalose and Glycerol

Marcus T. Cicerone, Christopher L. Soles

Biophysical Journal 2004 10.1529/biophysj.103.035519
[29]
Protein and solvent dynamics: How strongly are they coupled?

G. Caliskan, D. Mechtani, J. H. Roh et al.

The Journal of Chemical Physics 2004 10.1063/1.1764491
[30]
Belton P. S. Biopolymers (1994) 10.1002/bip.360340713
[31]
Sussich F. Carbohydr. Res. (2001) 10.1016/s0008-6215(01)00189-6
[32]
Sussich F. J. Am. Chem. Soc. (1998) 10.1021/ja9800479
[33]
Sum A. K. Biophys. J. (2003)
[34]
Doxastakis M. J. Phys. Chem. B (2005) 10.1021/jp054843u
[35]
A Molecular Dynamics Study of the Response of Lipid Bilayers and Monolayers to Trehalose

Anna Skibinsky, Richard M. Venable, Richard W. Pastor

Biophysical Journal 2005 10.1529/biophysj.105.065953
[36]
Pereira C. S. J. Phys. Chem. B (2006)
[37]
Cottone G. J. Chem. Phys. (2002) 10.1063/1.1518960
[38]
Gregory R. (1997)
[39]
Lerbret A. J. Phys. Chem. B (2005) 10.1021/jp0468657
[40]
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson et al.

Journal of Computational Chemistry 1983 10.1002/jcc.540040211
[41]
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

A. D. Mackerell, D. Bashford, M. Bellott et al.

The Journal of Physical Chemistry B 1998 10.1021/jp973084f
[42]
Carbohydrate solution simulations: Producing a force field with experimentally consistent primary alcohol rotational frequencies and populations

Michelle Kuttel, J. W. Brady, Kevin J. Naidoo

Journal of Computational Chemistry 2002 10.1002/jcc.10119
[43]
Berendsen H. J. C. J. Phys. Chem. (1987)
[44]
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

Jean-Paul Ryckaert, Giovanni Ciccotti, Herman J.C Berendsen

Journal of Computational Physics 1977 10.1016/0021-9991(77)90098-5
[45]
Hockney R. W. Methods Comput. Phys. (1970)
[46]
Berendsen H. J. C. J. Chem. Phys. (1984)
[47]
Essmann U. J. Chem. Phys. (1995)
[48]
Vaney M. C. Acta Crystallogr., Sect. D (1996) 10.1107/s090744499501674x
[49]
Sterpone F. J. Mol. Biol. (2001) 10.1006/jmbi.2001.4860
[50]
Bordat P. Europhys. Lett. (2004) 10.1209/epl/i2003-10052-0

Showing 50 of 74 references

Metrics
118
Citations
74
References
Details
Published
Jul 13, 2007
Vol/Issue
111(31)
Pages
9410-9420
Authors
Cite This Article
A. Lerbret, P. Bordat, F. Affouard, et al. (2007). How Do Trehalose, Maltose, and Sucrose Influence Some Structural and Dynamical Properties of Lysozyme? Insight from Molecular Dynamics Simulations. The Journal of Physical Chemistry B, 111(31), 9410-9420. https://doi.org/10.1021/jp071946z