journal article Dec 07, 2012

Tbf1 and Vid22 promote resection and non‐homologous end joining of DNA double‐strand break ends

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References
47
[1]
Arnerić M, Lingner J (2007) Tel1 kinase and subtelomere‐bound Tbf1 mediate preferential elongation of short telomeres by telomerase in yeast. EMBO Rep 8: 1080–1085 10.1038/sj.embor.7401082
[2]
Aylon Y, Liefshitz B, Kupiec M (2004) The CDK regulates repair of double‐strand breaks by homologous recombination during the cell cycle. EMBO J 23: 4868–4875 10.1038/sj.emboj.7600469
[3]
Badis G, Chan ET, van Bakel H, Pena‐Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD et al (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32: 878–887 10.1016/j.molcel.2008.11.020
[4]
Berthiau AS, Yankulov K, Bah A, Revardel E, Luciano P, Wellinger RJ, Géli V, Gilson E (2006) Subtelomeric proteins negatively regulate telomere elongation in budding yeast. EMBO J 25: 846–856 10.1038/sj.emboj.7600975
[5]
Bilaud T, Koering CE, Binet‐Brasselet E, Ancelin K, Pollice A, Gasser SM, Gilson E (1996) The telobox, a Myb‐related telomeric DNA binding motif found in proteins from yeast, plants and human. Nucleic Acids Res 24: 1294–1303 10.1093/nar/24.7.1294
[6]
Bird AW, Yu DY, Pray‐Grant MG, Qiu Q, Harmon KE, Megee PC, Grant PA, Smith MM, Christman MF (2002) Acetylation of histone H4 by Esa1 is required for DNA double‐strand break repair. Nature 419: 411–415 10.1038/nature01035
[7]
Brevet V, Berthiau AS, Civitelli L, Donini P, Schramke V, Géli V, Ascenzioni F, Gilson E (2003) The number of vertebrate repeats can be regulated at yeast telomeres by Rap1‐independent mechanisms. EMBO J 22: 1697–1706 10.1093/emboj/cdg155
[8]
Brigati C, Kurtz S, Balderes D, Vidali G, Shore D (1993) An essential yeast gene encoding a TTAGGG repeat‐binding protein. Mol Cell Biol 13: 1306–1314
[9]
Chen CC, Carson JJ, Feser J, Tamburini B, Zabaronick S, Linger J, Tyler JK (2008) Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair. Cell 134: 231–243 10.1016/j.cell.2008.06.035
[10]
Chen X, Cui D, Papusha A, Zhang X, Chu CD, Tang J, Chen K, Pan X, Ira G (2012) The Fun30 nucleosome remodeller promotes resection of DNA double‐strand break ends. Nature 489: 576–580 10.1038/nature11355
[11]
Clerici M, Mantiero D, Lucchini G, Longhese MP (2006) The Saccharomyces cerevisiae Sae2 protein negatively regulates DNA damage checkpoint signalling. EMBO Rep 7: 212–218 10.1038/sj.embor.7400593
[12]
Cockell MM, Lo Presti L, Cerutti L, Cano Del Rosario E, Hauser PM, Simanis V (2009) Functional differentiation of tbf1 orthologues in fission and budding yeasts. Eukaryot Cell 8: 207–216 10.1128/ec.00174-08
[13]
Costelloe T, Louge R, Tomimatsu N, Mukherjee B, Martini E, Khadaroo B, Dubois K, Wiegant WW, Thierry A, Burma S, van Attikum H, Llorente B (2012) The yeast Fun30 and human SMARCAD1 chromatin remodellers promote DNA end resection. Nature 489: 581–584 10.1038/nature11353
[14]
Downs JA, Lowndes NF, Jackson SP (2000) A role for Saccharomyces cerevisiae histone H2A in DNA repair. Nature 408: 1001–1004 10.1038/35050000
[15]
Fishman‐Lobell J, Rudin N, Haber JE (1992) Two alternative pathways of double‐strand break repair that are kinetically separable and independently modulated. Mol Cell Biol 12: 1292–1303
[16]
Fourel G, Boscheron C, Revardel E, Lebrun E, Hu YF, Simmen KC, Müller K, Li R, Mermod N, Gilson E (2001) An activation‐independent role of transcription factors in insulator function. EMBO Rep 2: 124–132 10.1093/embo-reports/kve024
[17]
Fourel G, Revardel E, Koering CE, Gilson E (1999) Cohabitation of insulators and silencing elements in yeast subtelomeric regions. EMBO J 18: 2522–2537 10.1093/emboj/18.9.2522
[18]
Fukunaga K, Hirano Y, Sugimoto K (2012) Subtelomere‐binding protein Tbf1 and telomere‐binding protein Rap1 collaborate to inhibit localization of the Mre11 complex to DNA ends in budding yeast. Mol Biol Cell 23: 347–359 10.1091/mbc.e11-06-0568
[19]
Hediger F, Berthiau AS, van Houwe G, Gilson E, Gasser SM (2006) Subtelomeric factors antagonize telomere anchoring and Tel1‐independent telomere length regulation. EMBO J 25: 857–867 10.1038/sj.emboj.7600976
[20]
Ira G, Pellicioli A, Balijja A, Wang X, Fiorani S, Carotenuto W, Liberi G, Bressan D, Wan L, Hollingsworth NM, Haber JE, Foiani M (2004) DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1. Nature 431: 1011–1017 10.1038/nature02964
[21]
Koering CE, Fourel G, Binet‐Brasselet E, Laroche T, Klein F, Gilson E (2000) Identification of high affinity Tbf1p‐binding sites within the budding yeast genome. Nucleic Acids Res 28: 2519–2526 10.1093/nar/28.13.2519
[22]
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

Nevan J. Krogan, Gerard Cagney, Haiyuan Yu et al.

Nature 2006 10.1038/nature04670
[23]
Lee SE, Moore JK, Holmes A, Umezu K, Kolodner RD, Haber JE (1998) Saccharomyces Ku70, mre11/rad50 and RPA proteins regulate adaptation to G2/M arrest after DNA damage. Cell 94: 399–409 10.1016/s0092-8674(00)81482-8
[24]
Lee SE, Pâques F, Sylvan J, Haber JE (1999) Role of yeast SIR genes and mating type in directing DNA double‐strand breaks to homologous and non‐homologous repair paths. Curr Biol 9: 767–770 10.1016/s0960-9822(99)80339-x
[25]
Liu ZP, Tye BK (1991) A yeast protein that binds to vertebrate telomeres and conserved yeast telomeric junctions. Genes Dev 5: 49–59 10.1101/gad.5.1.49
[26]
Longhese MP, Bonetti D, Manfrini N, Clerici M (2010) Mechanisms and regulation of DNA end resection. EMBO J 29: 2864–2874 10.1038/emboj.2010.165
[27]
Mimitou EP, Symington LS (2008) Sae2, Exo1 and Sgs1 collaborate in DNA double‐strand break processing. Nature 455: 770–774 10.1038/nature07312
[28]
Pâques F, Haber JE (1999) Multiple pathways of recombination induced by double‐strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 63: 349–404 10.1128/mmbr.63.2.349-404.1999
[29]
Pitt CW, Valente LP, Rhodes D, Simonsson T (2008) Identification and characterization of an essential telomeric repeat binding factor in fission yeast. J Biol Chem 283: 2693–2701 10.1074/jbc.m708784200
[30]
Preti M, Ribeyre C, Pascali C, Bosio MC, Cortelazzi B, Rougemont J, Guarnera E, Naef F, Shore D, Dieci G (2010) The telomere‐binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Mol Cell 38: 614–620 10.1016/j.molcel.2010.04.016
[31]
Ribaud V, Ribeyre C, Damay P, Shore D (2011) DNA‐end capping by the budding yeast transcription factor and subtelomeric binding protein Tbf1. EMBO J 31: 138–149 10.1038/emboj.2011.349
[32]
Saponaro M, Callahan D, Zheng X, Krejci L, Haber JE, Klein HL, Liberi G (2010) Cdk1 targets Srs2 to complete synthesis‐dependent strand annealing and to promote recombinational repair. PLoS Genet 6: e1000858 10.1371/journal.pgen.1000858
[33]
Shroff R, Arbel‐Eden A, Pilch D, Ira G, Bonner WM, Petrini JH, Haber JE, Lichten M (2004) Distribution and dynamics of chromatin modification induced by a defined DNA double‐strand break. Curr Biol 14: 1703–1711 10.1016/j.cub.2004.09.047
[34]
Sinha M, Peterson CL (2009) Chromatin dynamics during repair of chromosomal DNA double‐strand breaks. Epigenomics 1: 371–385 10.2217/epi.09.22
[35]
Soria G, Polo SE, Almouzni G (2012) Prime, repair, restore: the active role of chromatin in the DNA damage response. Mol Cell 46: 722–734 10.1016/j.molcel.2012.06.002
[36]
Symington LS, Gautier J (2011) Double‐strand break end resection and repair pathway choice. Annu Rev Genet 45: 247–271 10.1146/annurev-genet-110410-132435
[37]
Tamburini BA, Tyler JK (2005) Localized histone acetylation and deacetylation triggered by the homologous recombination pathway of double‐strand DNA repair. Mol Cell Biol 25: 4903–4913 10.1128/mcb.25.12.4903-4913.2005
[38]
Trovesi C, Falcettoni M, Lucchini G, Clerici M, Longhese MP (2011) Distinct Cdk1 requirements during single‐strand annealing, noncrossover, and crossover recombination. PLoS Genet 7: e1002263 10.1371/journal.pgen.1002263
[39]
Tsubouchi H, Ogawa H (1998) A novel mre11 mutation impairs processing of double‐strand breaks of DNA during both mitosis and meiosis. Mol Cell Biol 18: 260–268 10.1128/mcb.18.1.260
[40]
van Attikum H, Fritsch O, Gasser SM (2007) Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double‐strand breaks. EMBO J 26: 4113–4125 10.1038/sj.emboj.7601835
[41]
Vaze MB, Pellicioli A, Lee SE, Ira G, Liberi G, Arbel‐Eden A, Foiani M, Haber JE (2002) Recovery from checkpoint‐mediated arrest after repair of a double‐strand break requires Srs2 helicase. Mol Cell 10: 373–385 10.1016/s1097-2765(02)00593-2
[42]
Viscardi V, Bonetti D, Cartagena‐Lirola H, Lucchini G, Longhese MP (2007) MRX‐dependent DNA damage response to short telomeres. Mol Biol Cell 18: 3047–3058 10.1091/mbc.e07-03-0285
[43]
Vogelmann J, Valeri A, Guillou E, Cuvier O, Nollmann M (2011) Roles of chromatin insulator proteins in higher‐order chromatin organization and transcription regulation. Nucleus 2: 358–369 10.4161/nucl.2.5.17860
[44]
Xu Y, Price BD (2011) Chromatin dynamics and the repair of DNA double strand breaks. Cell Cycle 10: 261–267 10.4161/cc.10.2.14543
[45]
Yang XJ, Seto E (2008) The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men. Nat Rev Mol Cell Biol 9: 206–218 10.1038/nrm2346
[46]
Zhu Z, Chung WH, Shim EY, Lee SE, Ira G (2008) Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double‐strand break ends. Cell 134: 981–994 10.1016/j.cell.2008.08.037
[47]
Zou L, Elledge SJ (2003) Sensing DNA damage through ATRIP recognition of RPA‐ssDNA complexes. Science 300: 1542–1548 10.1126/science.1083430
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Published
Dec 07, 2012
Vol/Issue
32(2)
Pages
275-289
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Diego Bonetti, Savani Anbalagan, Giovanna Lucchini, et al. (2012). Tbf1 and Vid22 promote resection and non‐homologous end joining of DNA double‐strand break ends. The EMBO Journal, 32(2), 275-289. https://doi.org/10.1038/emboj.2012.327