Effects of co-solvents on peptide hydration water structure and dynamics

Margaret E. Johnson; Cecile Malardier-Jugroot; Teresa Head-Gordon

doi:10.1039/b915888j

journal article Open Access Jan 01, 2010

Effects of co-solvents on peptide hydration water structure and dynamics

Margaret E. Johnson Cecile Malardier-Jugroot Teresa Head-Gordon

Physical Chemistry Chemical Physics Vol. 12 No. 2 pp. 393-405 · Royal Society of Chemistry (RSC)

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References

53

[1]

Bondos Anal. Biochem. (2003) 10.1016/s0003-2697(03)00059-9

[2]

Dellerue Biophys. J. (2001) 10.1016/s0006-3495(01)75820-1

[3]

Instability, stabilization, and formulation of liquid protein pharmaceuticals

Wei Wang

International Journal of Pharmaceutics 1999 10.1016/s0378-5173(99)00152-0

[4]

Rivas Proc. Natl. Acad. Sci. U. S. A. (2001) 10.1073/pnas.051634398

[5]

Timasheff Annu. Rev. Biophys. Biomol. Struct. (1993) 10.1146/annurev.bb.22.060193.000435

[6]

Protein Denaturation

Charles Tanford

Advances in Protein Chemistry 1970 10.1016/s0065-3233(08)60241-7

[7]

Casassa Adv. Protein Chem. (1964) 10.1016/s0065-3233(08)60191-6

[8]

Kirkwood J. Chem. Phys. (1950) 10.1063/1.1747456

[9]

Stockmayer J. Chem. Phys. (1950) 10.1063/1.1747457

[10]

Davis-Searles Annu. Rev. Biophys. Biomol. Struct. (2001) 10.1146/annurev.biophys.30.1.271

[11]

Almarsson Biotechnol. Bioeng. (1996) 10.1002/(sici)1097-0290(19960105)49:1<87::aid-bit11>3.3.co;2-r

[12]

A relationship between protein stability and protein function.

B K Shoichet, W A Baase, R Kuroki et al.

Proceedings of the National Academy of Sciences 1995 10.1073/pnas.92.2.452

[13]

Rupley ACS Symp. Ser. (1980) 10.1021/bk-1980-0127.ch006

[14]

Formation of Glasses from Liquids and Biopolymers

C. A. Angell

Science 1995 10.1126/science.267.5206.1924

[15]

Chen Proc. Natl. Acad. Sci. U. S. A. (2006) 10.1073/pnas.0602474103

[16]

Tournier Biophys. J. (2003) 10.1016/s0006-3495(03)74614-1

[17]

Vitkup Nat. Struct. Biol. (2000) 10.1038/71231

[18]

Tarek Eur. Biophys. J. (2008) 10.1007/s00249-008-0324-x

[19]

Halle Philos. Trans. R. Soc. London, Ser. B (2004) 10.1098/rstb.2004.1499

[20]

Pizzitutti J. Phys. Chem. B (2007) 10.1021/jp0717185

[21]

Halle J. Am. Chem. Soc. (1981) 10.1021/ja00393a004

[22]

Marchi J. Am. Chem. Soc. (2002) 10.1021/ja025905m

[23]

Gekko Biochemistry (1981) 10.1021/bi00519a023

[24]

Correa Biophys. J. (2007) 10.1529/biophysj.106.098541

[25]

Rariy Proc. Natl. Acad. Sci. U. S. A. (1997) 10.1073/pnas.94.25.13520

[26]

Tjernberg J. Biomol. Screening (2006) 10.1177/1087057105284218

[27]

Arakawa Biophys. Chem. (2007) 10.1016/j.bpc.2007.09.004

[28]

Hydration Water Dynamics Near Biological Interfaces

Margaret E. Johnson, Cecile Malardier-Jugroot, Rajesh K. Murarka et al.

The Journal of Physical Chemistry B 2009 10.1021/jp806183v

[29]

Malardier-Jugroot Phys. Chem. Chem. Phys. (2008) 10.1039/b806995f

[30]

Malardier-Jugroot Phys. Chem. Chem. Phys. (2007) 10.1039/b616997j

[31]

Russo J. Phys. Chem. B (2004) 10.1021/jp046847p

[32]

Russo J. Phys. Chem. B (2005) 10.1021/jp051137k

[33]

Hydration Dynamics Near a Model Protein Surface

Daniela Russo, Greg Hura, Teresa Head-Gordon

Biophysical Journal 2004 10.1016/s0006-3495(04)74252-6

[34]

Qvist J. Am. Chem. Soc. (2008) 10.1021/ja802668w

[35]

Malardier-Jugroot Phys. Chem. Chem. Phys. (2010) 10.1039/b915346b

[36]

Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation

Pengyu Ren, Jay W. Ponder

The Journal of Physical Chemistry B 2003 10.1021/jp027815+

[37]

Temperature and Pressure Dependence of the AMOEBA Water Model

Pengyu Ren, Jay W. Ponder

The Journal of Physical Chemistry B 2004 10.1021/jp0484332

[38]

Force Fields for Protein Simulations

Jay W. Ponder, David A. Case

Advances in Protein Chemistry 2003 10.1016/s0065-3233(03)66002-x

[39]

M. J. Frisch , G. W.Trucks, H. B.Schlegel, G. E.Scuseria, M. A.Robb, J. R.Cheeseman, J. A.Montgomery, Jr, T.Vreven, K. N.Kudin, J. C.Burant, J. M.Millam, S. S.Iyengar, J.Tomasi, V.Barone, B.Mennucci, M.Cossi, G.Scalmani, N.Rega, G. A.Petersson, H.Nakatsuji, M.Hada, M.Ehara, K.Toyota, R.Fukuda, J.Hasegawa, M.Ishida, T.Nakajima, Y.Honda, O.Kitao, H.Nakai, M.Klene, X.Li, J. E.Knox, H. P.Hratchian, J. B.Cross, V.Bakken, C.Adamo, J.Jaramillo, R.Gomperts, R. E.Stratmann, O.Yazyev, A. J.Austin, R.Cammi, C.Pomelli, J. W.Ochterski, P. Y.Ayala, K.Morokuma, G. A.Voth, P.Salvador, J. J.Dannenberg, V. G.Zakrzewski, S.Dapprich, A. D.Daniels, M. C.Strain, O.Farkas, D. K.Malick, A. D.Rabuck, K.Raghavachari, J. B.Foresman, J. V.Ortiz, Q.Cui, A. G.Baboul, S.Clifford, J.Cioslowski, B. B.Stefanov, G.Liu, A.Liashenko, P.Piskorz, I.Komaromi, R. L.Martin, D. J.Fox, T.Keith, M. A.Al-Laham, C. Y.Peng, A.Nanayakkara, M.Challacombe, P. M. W.Gill, B.Johnson, W.Chen, M. W.Wong, C.Gonzalez and J. A.Pople, GAUSSIAN 03 (Revision C.02), Gaussian, Inc.,Wallingford, CT, 2004

[40]

Distributed multipole analysis, or how to describe a molecular charge distribution

A.J. Stone

Chemical Physics Letters 1981 10.1016/0009-2614(81)85452-8

[41]

Consistent treatment of inter‐ and intramolecular polarization in molecular mechanics calculations

Pengyu Ren, Jay W. Ponder

Journal of Computational Chemistry 2002 10.1002/jcc.10127

[42]

The MM3 force field for amides, polypeptides and proteins

Jenn‐Huei Lii, Norman L. Allinger

Journal of Computational Chemistry 1991 10.1002/jcc.540120208

[43]

Advances in methods and algorithms in a modern quantum chemistry program package

Yihan Shao, Laszlo Fusti Molnar, Yousung Jung et al.

Physical Chemistry Chemical Physics 2006 10.1039/b517914a

[44]

J. P. Hansen and I. R.McDonald, Theory of Simple Liquids, Academic Press, London, 3rd edn, 2006

[45]

Palmer Phys. Rev. Lett. (1984) 10.1103/physrevlett.53.958

[46]

Zanotti Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. (1999) 10.1103/physreve.59.3084

[47]

Sears Can. J. Phys. (1967) 10.1139/p67-025

[48]

Chen Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. (1997) 10.1103/physreve.56.4231

[49]

Luzar Nature (1996) 10.1038/379055a0

[50]

Ferrario J. Chem. Phys. (1990) 10.1063/1.458652

Showing 50 of 53 references

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Details

Published: Jan 01, 2010
Vol/Issue: 12(2)
Pages: 393-405

Authors

M

Margaret E. Johnson

C

Cecile Malardier-Jugroot

UCSF/UCB Joint Graduate Group in Bioengineering, Department of Bioengineering, University of California, Berkeley, California 94720, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Chemistry and Chemical Engineering, Royal Military College of Canada, Kingston, K7K 7B4, Canada, and Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853

T

Teresa Head-Gordon

Departments of Chemistry, Bioengineering, Chemical and Biomolecular Engineering, and Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, Berkeley, California 94720, United States; Chemical Sciences Division, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States

Cite This Article

Margaret E. Johnson, Cecile Malardier-Jugroot, Teresa Head-Gordon (2010). Effects of co-solvents on peptide hydration water structure and dynamics. Physical Chemistry Chemical Physics, 12(2), 393-405. https://doi.org/10.1039/b915888j

Effects of co-solvents on peptide hydration water structure and dynamics

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