Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

Fay-Wei Li; Li-Yaung Kuo; KATHLEEN M. PRYER; Carl J. Rothfels

doi:10.1093/gbe/evw167

journal article Jul 10, 2016

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

Fay-Wei Li

Li-Yaung Kuo KATHLEEN M. PRYER Carl J. Rothfels

Genome Biology and Evolution Vol. 8 No. 8 pp. 2452-2458 · Oxford University Press (OUP)

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References

41

[1]

Birky "Biased gene conversion, copy number, and apparent mutation rate differences within chloroplast and bacterial genomes" Genetics (1992) 10.1093/genetics/130.3.677

[2]

10.1038/nrg1020

[3]

Clegg "Chloroplast DNA variation in pearl millet and related species" Genetics (1984) 10.1093/genetics/106.3.449

[4]

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Wayne Delport, Art F. Y. Poon, Simon D. W. Frost et al.

Bioinformatics 10.1093/bioinformatics/btq429

[5]

Der JP. 2010. Genomic perspectives on evolution in bracken fern. PhD dissertation. Logan UT, USA: Utah State University.

[6]

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar

Nucleic Acids Research 10.1093/nar/gkh340

[7]

10.1093/gbe/evt099

[8]

10.1186/1471-2148-9-130

[9]

10.1146/annurev-ecolsys-102710-145119

[10]

10.1186/1471-2148-13-8

[11]

10.1186/1471-2148-10-321

[12]

10.14348/molcells.2014.2296

[13]

10.1111/j.1558-5646.2010.01000.x

[14]

10.1111/j.1558-5646.2010.01160.x

[15]

10.1038/ncomms2836

[16]

10.1016/j.tree.2010.06.007

[17]

10.1371/journal.pone.0026597

[18]

10.1093/gbe/evs021

[19]

10.1111/jse.12180

[20]

10.1073/pnas.90.9.4087

[21]

10.1186/1471-2148-5-73

[22]

10.1007/s00239-002-2333-y

[23]

10.1640/0002-8444(2007)97[95:tcpgso]2.0.co;2

[24]

10.3732/ajb.1500089

[25]

10.1093/sysbio/syt058

[26]

10.1080/10635150600755438

[27]

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

Stephen A. Smith, Michael J. Donoghue

Science 10.1126/science.1163197

[28]

Wakasugi "A complete nucleotide sequence of the plastid genome from a fern, Psilotum nudum." Endocyt Cell Res. (1998)

[29]

10.1093/molbev/msu400

[30]

10.1093/gbe/evv163

[31]

10.1007/s11103-010-9706-4

[32]

Wolf "The evolution of chloroplast genome structure in ferns" Genome (2010) 10.1139/g10-061

[33]

10.1093/dnares/10.2.59

[34]

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

K H Wolfe, W H Li, P M Sharp

Proceedings of the National Academy of Sciences 10.1073/pnas.84.24.9054

[35]

10.1093/molbev/msg167

[36]

10.1098/rspb.2005.3217

[37]

10.1073/pnas.82.6.1741

[38]

10.1093/gbe/evv125

[39]

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Z. Yang

Molecular Biology and Evolution 10.1093/molbev/msm088

[40]

10.1093/gbe/evu087

[41]

10.1111/nph.13743

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References

Details

Published: Jul 10, 2016
Vol/Issue: 8(8)
Pages: 2452-2458

Authors

Cite This Article

Fay-Wei Li, Li-Yaung Kuo, KATHLEEN M. PRYER, et al. (2016). Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content. Genome Biology and Evolution, 8(8), 2452-2458. https://doi.org/10.1093/gbe/evw167

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content

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