journal article Jul 06, 2020

Where Did SARS-CoV-2 Come From?

View at Publisher Save 10.1093/molbev/msaa162
Abstract
Abstract
Identifying the origin of SARS-CoV-2, the etiological agent of the current COVID-19 pandemic, may help us to avoid future epidemics of coronavirus and other zoonoses. Several theories about the zoonotic origin of SARS-CoV-2 have recently been proposed. Although Betacoronavirus found in Rhinolophus bats from China have been broadly implicated, their genetic dissimilarity to SARS-CoV-2 is so high that they are highly unlikely to be its direct ancestors. Thus, an intermediary host is suspected to link bat to human coronaviruses. Based on genomic CpG dinucleotide patterns in different coronaviruses from different hosts, it was suggested that SARS-CoV-2 might have evolved in a canid gastrointestinal tract prior to transmission to humans. However, similar CpG patterns are now reported in coronaviruses from other hosts, including bats themselves and pangolins. Therefore, reduced genomic CpG alone is not a highly predictive biomarker, suggesting a need for additional biomarkers to reveal intermediate hosts or tissues. The hunt for the zoonotic origin of SARS-CoV-2 continues.
Topics

No keywords indexed for this article. Browse by subject →

References
18
[1]
The proximal origin of SARS-CoV-2

Kristian G. Andersen, Andrew Rambaut, W. Ian Lipkin et al.

Nature Medicine 2020 10.1038/s41591-020-0820-9
[2]
Corman (2018)
[3]
Identification of a Novel Coronavirus in Patients with Severe Acute Respiratory Syndrome

Christian Drosten, Stephan Günther, Wolfgang Preiser et al.

New England Journal of Medicine 2003 10.1056/nejmoa030747
[4]
Dudas "MERS-CoV spillover at the camel-human interface" eLife (2018) 10.7554/elife.31257
[5]
Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor

Xing-Yi Ge, Jia-Lu Li, Xing-Lou Yang et al.

Nature 2013 10.1038/nature12711
[6]
Graham "Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission" J Virol (2010) 10.1128/jvi.01394-09
[7]
Hu "Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus" PLoS Pathog (2017) 10.1371/journal.ppat.1006698
[8]
Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins

Tommy Tsan-Yuk Lam, Na Jia, Ya-Wei Zhang et al.

Nature 2020 10.1038/s41586-020-2169-0
[9]
Li "Bats are natural reservoirs of SARS-like coronaviruses" Science (2005) 10.1126/science.1118391
[10]
Licitra "Canine enteric coronaviruses: emerging viral pathogens with distinct recombinant spike proteins" Viruses (2014) 10.3390/v6083363
[11]
Luan "SARS-CoV-2 spike protein favors ACE2 from Bovidae and Cricetidae" J Med Virol (2020)
[12]
Mavian "Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-CoV-2 infections unreliable" Proc Natl Acad Sci U S A (2020) 10.1073/pnas.2007295117
[13]
Pollock "Viral CpG deficiency provides no evidence that dogs were intermediate hosts for SARS-CoV-2" Mol Biol Evol (2020) 10.1093/molbev/msaa178
[14]
Virological assessment of hospitalized patients with COVID-2019

Roman Wölfel, Victor M. Corman, Wolfgang Guggemos et al.

Nature 2020 10.1038/s41586-020-2196-x
[15]
Xia "Extreme genomic CpG deficiency in SARS-CoV-2 and evasion of host antiviral defense" Mol Biol Evol (2020) 10.1093/molbev/msaa094
[16]
Xiao "Isolation of SARS-CoV-2-related coronavirus from Malayan pangolins Nature" (2020)
[17]
Yang "Novel SARS-like betacoronaviruses in bats, China, 2011" Emerg Infect Dis (2013) 10.3201/eid1906.121648
[18]
A pneumonia outbreak associated with a new coronavirus of probable bat origin

Peng Zhou, Xing-Lou Yang, Xian-Guang Wang et al.

Nature 2020 10.1038/s41586-020-2012-7
Cited By
23
International Journal of Veterinary...
Frontiers in Microbiology
Metrics
23
Citations
18
References
Details
Published
Jul 06, 2020
Vol/Issue
37(9)
Pages
2463-2464
License
View
Cite This Article
Thomas Leitner, Sudhir Kumar (2020). Where Did SARS-CoV-2 Come From?. Molecular Biology and Evolution, 37(9), 2463-2464. https://doi.org/10.1093/molbev/msaa162