journal article Open Access Feb 25, 2012

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

View at Publisher Save 10.1093/molbev/mss075
Topics

No keywords indexed for this article. Browse by subject →

References
24
[1]
Alekseyenko "Wagner and Dollo: a stochastic duet by composing two parsimonious solos" Syst Biol. (2008) 10.1080/10635150802434394
[2]
Ayres "BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics" Syst Biol. (2011) 10.1093/sysbio/syr100
[3]
Bielejec "Spread: spatial phylogenetic reconstruction of evolutionary dynamics" Bioinformatics (2011) 10.1093/bioinformatics/btr481
[4]
Bloomquist "Unifying vertical and nonvertical evolution: a stochastic ARG-based framework" Syst Biol. (2010) 10.1093/sysbio/syp076
[5]
Drummond "Beast: Bayesian evolutionary analysis by sampling trees" BMC Evol Biol. (2007) 10.1186/1471-2148-7-214
[6]
Drummond "Bayesian random local clocks, or one rate to rule them all" BMC Biol. (2010) 10.1186/1741-7007-8-114
[7]
Heled "Bayesian inference of population size history from multiple loci" BMC Evol Biol. (2008) 10.1186/1471-2148-8-289
[8]
Heled "Bayesian inference of species trees from multilocus data" Mol Biol Evol. (2010) 10.1093/molbev/msp274
[9]
Heled "Calibrated tree priors for relaxed phylogenetics and divergence time estimation" Syst Biol. (2011) 10.1093/sysbio/syr087
[10]
Lemey "Bayesian phylogeography finds its roots" PLoS Comput Biol. (2009) 10.1371/journal.pcbi.1000520
[11]
Lemey "Phylogeography takes a relaxed random walk in continuous space and time" Mol Biol Evol. (2010) 10.1093/molbev/msq067
[12]
Li "Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics" Mol Biol Evol. (2012) 10.1093/molbev/msr232
[13]
McCormack "Calibrating divergence times on species trees versus gene trees: implications for speciation history of aphelocoma jays" Evolution (2011) 10.1111/j.1558-5646.2010.01097.x
[14]
Minin "Counting labeled transitions in continuous-time Markov models of evolution" J Math Biol. (2008) 10.1007/s00285-007-0120-8
[15]
Minin "Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics" Mol Biol Evol. (2008) 10.1093/molbev/msn090
[16]
O'Brien "Learning to count: robust estimates for labeled distances between molecular sequences" Mol Biol Evol. (2009) 10.1093/molbev/msp003
[17]
Rambaut "Accommodating the effect of ancient DNA damage on inferences of demographic histories" Mol Biol Evol. (2009) 10.1093/molbev/msn256
[18]
Sato "Phylogeny of Darwin's finches as revealed by mtDNA sequences" Proc Natl Acad Sci U S A. (1999) 10.1073/pnas.96.9.5101
[19]
Shapiro "A Bayesian phylogenetic method to estimate unknown sequence ages" Mol Biol Evol. (2011) 10.1093/molbev/msq262
[20]
Stadler "Sampling-through-time in birth–death trees" J Theor Biol. (2010) 10.1016/j.jtbi.2010.09.010
[21]
Suchard "Many-core algorithms for statistical phylogenetics" Bioinformatics (2009) 10.1093/bioinformatics/btp244
[22]
Suchard "Hierarchical phylogenetic models for analyzing multipartite sequence data" Syst Biol. (2003) 10.1080/10635150390238879
[23]
Sulloway "The Beagle collections of Darwin's finches (Geospizinae)" Bull Br Mus. (1982)
[24]
Wu "Joint inference of microsatellite mutation models, population history and genealogies using trans-dimensional MCMC" Genetics (2011) 10.1534/genetics.110.125260
Cited By
8,958
New Zealand Journal of Marine and F...
New Zealand Journal of Botany
Proceedings of the National Academy...
Diversification of flowering plants in space and time

Dimitar Dimitrov, Xiaoting Xu · 2023

Nature Communications
Metrics
8,958
Citations
24
References
Details
Published
Feb 25, 2012
Vol/Issue
29(8)
Pages
1969-1973
Cite This Article
Alexei J. Drummond, Marc A. Suchard, Dong Xie, et al. (2012). Bayesian Phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29(8), 1969-1973. https://doi.org/10.1093/molbev/mss075