journal article Open Access Sep 22, 2016

Genome-Based Genetic Tool Development for Bacillus methanolicus: Theta- and Rolling Circle-Replicating Plasmids for Inducible Gene Expression and Application to Methanol-Based Cadaverine Production

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References
83
[1]
Alonso "Plasmid maintenance in Bacillus subtilis recombination-deficient mutants." Mol. Gen. Genet. (1987) 10.1007/bf00330464
[2]
Arfman "Bacillus methanolicus sp. nov., a new species of thermotolerant, methanol-utilizing, endospore-forming bacteria." Int. J. Syst. Bacteriol. (1992) 10.1099/00207713-42-3-439
[3]
Bhavsar "Development and characterization of a xylose-dependent system for expression of cloned genes in Bacillus subtilis: conditional complementation of a teichoic acid mutant development and characterization of a xylose-dependent system for expression of." Appl. Environ. Microbiol. (2001) 10.1128/aem.67.1.403
[4]
Brautaset "Bacillus methanolicus pyruvate carboxylase and homoserine dehydrogenase I and II and their roles for L-lysine production from methanol at 50°C." Appl. Microbiol. Biotechnol. (2010) 10.1007/s00253-010-2559-6
[5]
Brautaset "Plasmid-dependent methylotrophy in thermotolerant Bacillus methanolicus." J. Bacteriol. (2004) 10.1128/jb.186.5.1229
[6]
Bron "Stability function in the Bacillus subtilis plasmid pTA1060 since natural plasmids in Bacillus subtilis." Plasmid (1987) 10.1016/0147-619x(87)90073-4
[7]
Bron "Segregational instability of pUB110-derived recombinant plasmids in Bacillus subtilis." Plasmid (1985) 10.1016/0147-619x(85)90007-1
[8]
Bron "Instability of recombinant pUB110 plasmids in Bacillus subtilis: plasmid-encoded stability function and effects of DNA inserts." Plasmid (1988) 10.1016/0147-619x(88)90041-8
[9]
Bruand "Unidirectional theta replication of the structurally stable Enterococcus faecalis plasmid pAM beta 1." EMBO J. (1991) 10.1002/j.1460-2075.1991.tb07752.x
[10]
Chaillou "Molecular cloning and functional expression in Lactobacillus plantarum 80 of xylT, encoding the D-xylose-H+ symporter of Lactobacillus brevis." Appl Environ. Microbiol. (1998) 10.1128/aem.64.12.4720-4728.1998
[11]
Green Fluorescent Protein as a Marker for Gene Expression

Martin Chalfie, Yuan Tu, Ghia Euskirchen et al.

Science 1994 10.1126/science.8303295
[12]
Chang "Structural and genetic analyses of a par locus that regulates plasmid partition in Bacillus subtilis." J. Bacteriol. (1987) 10.1128/jb.169.9.3952-3962.1987
[13]
Improved Green Fluorescent Protein by Molecular Evolution Using DNA Shuffling

Andreas Crameri, Erik A. Whitehorn, Emily Tate et al.

Nature Biotechnology 1996 10.1038/nbt0396-315
[14]
Crutz-Le Coq "Vectors for lactobacilli and other Gram-positive bacteria based on the minimal replicon of pRV500 from Lactobacillus sakei." Plasmid (2008) 10.1016/j.plasmid.2008.08.002
[15]
Cue "Genetic manipulation of Bacillus methanolicus, a gram-positive, thermotolerant methylotroph." Appl. Environ. Microbiol. (1997) 10.1128/aem.63.4.1406-1420.1997
[16]
D’Urzo "High-level intracellular expression of heterologous proteins in Brevibacillus choshinensis SP3 under the control of a xylose inducible promoter." Microb. Cell Fact. (2013) 10.1186/1475-2859-12-12
[17]
Eikmanns "Nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase." Microbiology (1994) 10.1099/13500872-140-8-1817
[18]
Friehs "Plasmid copy number and plasmid stability." Adv. Biochem. Eng. Biotechnol. (2004) 10.1007/b12440
[19]
Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G Gibson, Lei Young, Ray-Yuan Chuang et al.

Nature Methods 2009 10.1038/nmeth.1318
[20]
Gryczan "Characterization of Staphylococcus aureus plasmids introduced by transformation into Bacillus subtilis." J. Bacteriol. (1978) 10.1128/jb.134.1.318-329.1978
[21]
Haima "The effect of restriction on shotgun cloning and plasmid stability in Bacillus subtilis Marburg." Mol. Gen. Genet. (1987) 10.1007/bf00329663
[22]
Studies on transformation of Escherichia coli with plasmids

Douglas Hanahan

Journal of Molecular Biology 1983 10.1016/s0022-2836(83)80284-8
[23]
Hanson "Production of L-lysine and some other amino acids by mutants of B. methanolicus" Microbial Growth on C<sub>1</sub> Compounds (1996) 10.1007/978-94-009-0213-8_31
[24]
Heggeset "Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol." Appl. Environ. Microbiol. (2012) 10.1128/aem.00703-12
[25]
Heravi "Regulation of mtl operon promoter of Bacillus subtilis: requirements of its use in expression vectors." Microb. Cell Fact. (2011) 10.1186/1475-2859-10-83
[26]
Higa "Calcium-dependent bacteriophage DNA infection." J. Mol. Biol. (1970) 10.1016/0022-2836(70)90051-3
[27]
Hilker "ReadXplorer–visualization and analysis of mapped sequences." Bioinformatics (2014) 10.1093/bioinformatics/btu205
[28]
Hoffmann "Functional characterization of the mannitol promoter of Pseudomonas fluorescens DSM 50106 and its application for a mannitol-inducible expression system for Pseudomonas putida KT2440." PLoS ONE (2015) 10.1371/journal.pone.0133248
[29]
IHS Chemical. (2016)
[31]
Irla "Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph." J. Biotechnol. (2014) 10.1016/j.jbiotec.2014.08.013
[32]
Jacob "Catabolite repression of the operon for xylose utilization from Bacillus subtilis W23 is mediated at the level of transcription and depends on a cis site in the xylA reading frame." Mol. Gen. Genet. (1991) 10.1007/bf00272155
[33]
Jakobsen "Upregulated transcription of plasmid and chromosomal ribulose monophosphate pathway genes is critical for methanol assimilation rate and methanol tolerance in the methylotrophic bacterium Bacillus methanolicus." J. Bacteriol. (2006) 10.1128/jb.188.8.3063
[34]
Jakobsen "Overexpression of wild-type aspartokinase increases L-lysine production in the thermotolerant methylotrophic bacterium Bacillus methanolicus." Appl. Environ. Microbiol. (2009) 10.1128/aem.01176-08
[35]
Joyet "PTS-mediated regulation of the transcription activator MtlR from different species: surprising differences despite strong sequence conservation." J. Mol. Microbiol. Biotechnol. (2015) 10.1159/000369619
[36]
Khan "Rolling-circle replication of bacterial plasmids." Microbiol. Mol. Biol. Rev. (1997) 10.1128/.61.4.442-455.1997
[37]
Kiefer "DynaMet: a fully automated pipeline for dynamic LC-MS data." Anal. Chem. (2015) 10.1021/acs.analchem.5b01660
[38]
Kim "A xylose-inducible Bacillus subtilis integration vector and its application." Gene (1996) 10.1016/s0378-1119(96)00466-0
[39]
Kovács "Genetic tool development for a new host for biotechnology, the thermotolerant bacterium Bacillus coagulans." Appl. Environ. Microbiol. (2010) 10.1128/aem.03060-09
[40]
Krog "Methylotrophic Bacillus methanolicus encodes two chromosomal and one plasmid born NAD+ dependent methanol dehydrogenase paralogs with different catalytic and biochemical properties." PLoS ONE (2013) 10.1371/journal.pone.0059188
[41]
Liu "An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol." BMC Biotechnol. (2008) 10.1186/1472-6750-8-91
[42]
Lokman "Promoter analysis and transcriptional regulation of Lactobacillus pentosus genes involved in xylose catabolism." Mol. Gen. Genet. (1994) 10.1007/bf00279757
[43]
Markert "Characterization of two transketolases encoded on the chromosome and the plasmid pBM19 of the facultative ribulose monophosphate cycle methylotroph Bacillus methanolicus." BMC Microbiol. (2014) 10.1186/1471-2180-14-7
[44]
Miyoshi "A xylose-inducible expression system for Lactococcus lactis." FEMS Microbiol. Lett. (2004) 10.1016/j.femsle.2004.08.018
[45]
Müller "Methylotrophy in the thermophilic Bacillus methanolicus, basic insights and application for commodity production from methanol." Appl. Microbiol. Biotechnol. 10.1007/s00253-014-6224-3
[46]
Müller "Core pathways operating during methylotrophy of Bacillus methanolicus MGA3 and induction of a bacillithiol-dependent detoxification pathway upon formaldehyde stress." Mol. Microbiol. 10.1111/mmi.13200
[47]
Müller "Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3." Proteomics (2014) 10.1002/pmic.201300515
[48]
Naglich "Tn916-dependent conjugal transfer of pC194 and pUB110 from Bacillus subtilis into Bacillus thuringiensis subsp. israelensis." Plasmid (1988) 10.1016/0147-619x(88)90014-5
[49]
Nærdal "Methanol-based cadaverine production by genetically engineered Bacillus methanolicus strains." Microb. Biotechnol. (2015) 10.1111/1751-7915.12257
[50]
Nguyen "Construction of plasmid-based expression vectors for Bacillus subtilis exhibiting full structural stability." Plasmid (2005) 10.1016/j.plasmid.2005.05.001

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Published
Sep 22, 2016
Vol/Issue
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Funding
Seventh Framework Programme Award: PROMYSE
Cite This Article
Marta Irla, Tonje M. B. Heggeset, Ingemar Nærdal, et al. (2016). Genome-Based Genetic Tool Development for Bacillus methanolicus: Theta- and Rolling Circle-Replicating Plasmids for Inducible Gene Expression and Application to Methanol-Based Cadaverine Production. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.01481
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