journal article Open Access Sep 30, 2019

Transcription Factors Associated with Abiotic and Biotic Stress Tolerance and Their Potential for Crops Improvement

Genes Vol. 10 No. 10 pp. 771 · MDPI AG
View at Publisher Save 10.3390/genes10100771
Abstract
In field conditions, crops are adversely affected by a wide range of abiotic stresses including drought, cold, salt, and heat, as well as biotic stresses including pests and pathogens. These stresses can have a marked effect on crop yield. The present and future effects of climate change necessitate the improvement of crop stress tolerance. Plants have evolved sophisticated stress response strategies, and genes that encode transcription factors (TFs) that are master regulators of stress-responsive genes are excellent candidates for crop improvement. Related examples in recent studies include TF gene modulation and overexpression approaches in crop species to enhance stress tolerance. However, much remains to be discovered about the diverse plant TFs. Of the >80 TF families, only a few, such as NAC, MYB, WRKY, bZIP, and ERF/DREB, with vital roles in abiotic and biotic stress responses have been intensively studied. Moreover, although significant progress has been made in deciphering the roles of TFs in important cereal crops, fewer TF genes have been elucidated in sorghum. As a model drought-tolerant crop, sorghum research warrants further focus. This review summarizes recent progress on major TF families associated with abiotic and biotic stress tolerance and their potential for crop improvement, particularly in sorghum. Other TF families and non-coding RNAs that regulate gene expression are discussed briefly. Despite the emphasis on sorghum, numerous examples from wheat, rice, maize, and barley are included. Collectively, the aim of this review is to illustrate the potential application of TF genes for stress tolerance improvement and the engineering of resistant crops, with an emphasis on sorghum.
Topics

No keywords indexed for this article. Browse by subject →

References
155
[1]
Foyer "Cross-tolerance to biotic and abiotic stresses in plants: A focus on resistance to aphid infestation" J. Exp. Bot. (2016) 10.1093/jxb/erw079
[2]
Cohen, S.P., and Leach, J.E. (2019). Abiotic and biotic stresses induce a core transcriptome response in rice. Sci. Rep., 1–11. 10.1038/s41598-019-42731-8
[3]
Ahmed, M., and Stockle, C.O. (2017). Effects of Abiotic Stress in Crop Production, Quantification of Climate Variability, Adaptation and Mitigation for Agricultural Sustainability, Springer. 10.1007/978-3-319-32059-5
[4]
Crop losses due to diseases and their implications for global food production losses and food security

Serge Savary, Andrea Ficke, Jean-Noël Aubertot et al.

Food Security 2012 10.1007/s12571-012-0200-5
[5]
Ji "Genetic transformation of major cereal crops" Int J. Dev. Biol. (2013) 10.1387/ijdb.130244kw
[6]
Woldesemayat "Pathways and Network Based Analysis of Candidate Genes to Reveal Cross-Talk and Specificity in the Sorghum (Sorghum bicolor (L.) Moench) Responses to Drought and It’s Co-occurring Stresses" Front. Genet. (2018) 10.3389/fgene.2018.00557
[7]
Woldesemayat "An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)" BMC Genet. (2017) 10.1186/s12863-017-0584-5
[8]
Aglawe "Quantitative RT-PCR analysis of 20 transcription factor genes of MADS, ARF, HAP2, MBF and HB families in moisture stressed shoot and root tissues of sorghum" Physiol. Mol. Biol. Plants (2012) 10.1007/s12298-012-0135-5
[9]
Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress

Stephanie M Johnson, Fei-Ling Lim, Aliza Finkler et al.

BMC Genomics 10.1186/1471-2164-15-456
[10]
Erpen "Potential use of the DREB/ERF, MYB, NAC and WRKY transcription factors to improve abiotic and biotic stress in transgenic plants" Plant Cell Tissue Organ Cult. (2018) 10.1007/s11240-017-1320-6
[11]
Nath, V.S., Mishra, A.K., Kumar, A., Matousek, J., and Jakse, J. (2019). Revisiting the role of transcription factor in coordinating the defense response against Citrus Bark Cracking Viroid infection in commercial hop (Humulus lupulus L.). Viruses J., 11. 10.3390/v11050419
[12]
Inukai "Transcription factor-DNA binding: Beyond binding site motifs" Curr. Opin. Genet. Dev. (2017) 10.1016/j.gde.2017.02.007
[13]
Gonzalez, D.H. (2015). Plant Transcription Factors: Evolutionary, Structural and Functional Aspects. Plant Transcription Factors: Evolutionary, Structural and Functional Aspects, Elsevier.
[14]
Wang "Recent Advances in Utilizing Transcription Factors to Improve Plant Abiotic Stress Tolerance by Transgenic Technology" Front. Plant Sci. (2016)
[15]
Wang "Genome-wide Expansion and Expression Divergence of the Basic Leucine Zipper Transcription Factors in Higher Plants with an Emphasis on Sorghum" J. Integr. Plant Biol. (2011) 10.1111/j.1744-7909.2010.01017.x
[16]
Hoang "Transcription Factors and Their Roles in Signal Transduction in Plants under Abiotic Stresses" Curr. Genomics (2017) 10.2174/1389202918666170227150057
[17]
Kimotho "Transcription factors involved in abiotic stress responses in maize (Zea mays L.) and their roles in enhanced productivity in the post genomics era Transcription Factors involved in Abiotic stress responses in Maize (Zea mays L.) and their roles in En" Peer J. (2019) 10.7717/peerj.7211
[18]
Hong "The role of transcription factor in wheat defense against pathogen and its prospect in breeding" J. Plant Biol. Crop Res. (2018) 10.33582/2637-7721/1005
[19]
Urban "Biological networks underlying abiotic stress tolerance in temperate crops-a proteomic perspective" Int. J. Mol. Sci. (2015) 10.3390/ijms160920913
[20]
Finer "Identification and validation of promoters and cis-acting regulatory elements" Plant Sci. (2014)
[21]
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes

J. L. Riechmann, J. Heard, G. Martin et al.

Science 2000 10.1126/science.290.5499.2105
[22]
Sablowski "A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA\rThe no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundaries" Cell (1998) 10.1016/s0092-8674(00)80902-2
[23]
Aida "Genes Involved in Organ Separation in Arabidopsis: An Analysis of the cup-shaped cotyledon Mutant" Plant Cell Online (1997) 10.1105/tpc.9.6.841
[24]
Puranik "NAC proteins: Regulation and role in stress tolerance" Trends Plant Sci. (2012) 10.1016/j.tplants.2012.02.004
[25]
Functional analysis of a NAC‐type transcription factor OsNAC6 involved in abiotic and biotic stress‐responsive gene expression in rice

Kazuo Nakashima, Lam‐Son P. Tran, Dong Van Nguyen et al.

The Plant Journal 2007 10.1111/j.1365-313x.2007.03168.x
[26]
Nuruzzaman "Genome-wide analysis of NAC transcription factor family in rice" Gene (2010) 10.1016/j.gene.2010.06.008
[27]
Zhang, Y., Li, D., Wang, Y., Zhou, R., Wang, L., Zhang, Y., Yu, J., Gong, H., You, J., and Zhang, X. (2018). Genome-wide identification and comprehensive analysis of the NAC transcription factor family in Sesamum indicum. PLoS ONE, 13. 10.1371/journal.pone.0199262
[28]
Fujita "A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway" Plant J. (2004) 10.1111/j.1365-313x.2004.02171.x
[30]
Kadier "Genome-wide identification, classification and expression analysis of NAC family of genes in sorghum (Sorghum bicolor (L.) Moench)" Plant Growth Regul. (2017) 10.1007/s10725-017-0295-y
[31]
Sanjari "Systematic analysis of NAC transcription factors’ gene family and identification of post-flowering drought stress responsive members in sorghum" Plant Cell (2019) 10.1007/s00299-019-02371-8
[32]
Lu "Expression of SbSNAC1, a NAC transcription factor from sorghum, confers drought tolerance to transgenic Arabidopsis" Plant Cell (2013)
[33]
Lu "A maize stress-responsive NAC transcription factor, ZmSNAC1, confers enhanced tolerance to dehydration in transgenic Arabidopsis" Plant Cell (2012) 10.1007/s00299-012-1284-2
[34]
Zhang, H., and Huang, Y. (2013, January 12–16). Genome-wide survey and characterization of greenbug induced NAC transcription factors in sorghum (Sorghum bicolor (L.) Moench). Proceedings of the XXI Annual International Plant & Animal Genome Conference, San Diego, CA, USA.
[35]
Zhang "The Novel Wheat Transcription Factor TaNAC47 Enhances Multiple Abiotic Stress Tolerances in Transgenic Plants" Front. Plant Sci. (2016) 10.3389/fpls.2015.01174
[36]
Huang "TaNAC29, a NAC transcription factor from wheat, enhances salt and drought tolerance in transgenic Arabidopsis" BMC Plant Biol. (2015) 10.1186/s12870-015-0644-9
[37]
Saad "A rice stress-responsive NAC gene enhances tolerance of transgenic wheat to drought and salt stresses" Plant Sci. (2013) 10.1016/j.plantsci.2012.12.016
[38]
Zhou "TaNAC6s are involved in the basal and broad-spectrum resistance to powdery mildew in wheat" Plant Sci. (2018) 10.1016/j.plantsci.2018.09.014
[39]
Fang "(A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice" J. Exp. Bot. (2015) 10.1093/jxb/erv386
[40]
Zheng "Overexpression of a NAC transcription factor enhances rice drought and salt tolerance" Biochem. Biophys. Res. Commun. (2009) 10.1016/j.bbrc.2008.12.163
[41]
Chung, P.J., Jung, H., Choi, Y.D., and Kim, J. (2018). Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance. BMC Genomics, 1–17. 10.1186/s12864-017-4367-1
[42]
Shim "Overexpression of OsNAC14 Improves Drought Tolerance in Rice" Front. Plant Sci. (2018) 10.3389/fpls.2018.00310
[43]
Chen "The barley HvNAC6 transcription factor affects ABA accumulation and promotes basal resistance against powdery mildew" Plant Mol. Biol. (2013) 10.1007/s11103-013-0109-1
[44]
Shen, J., Lv, B., Luo, L., He, J., Mao, C., Xi, D., and Ming, F. (2017). The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice. Sci. Rep., 7. 10.1038/srep40641
[45]
Liu "NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice" Plant Mol. Biol. (2018) 10.1007/s11103-018-0768-z
[46]
Rahman, H., Ramanathan, V., Nallathambi, J., Duraialagaraja, S., and Muthurajan, R. (2016). Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice. BMC Biotechnol., 16. 10.1186/s12896-016-0261-1
[47]
Mao "ZmNAC55, a maize stress-responsive NAC transcription factor, confers drought resistance in transgenic Arabidopsis" Plant Physiol. Biochem. (2016) 10.1016/j.plaphy.2016.04.018
[48]
Yao, W., Zhao, K., Cheng, Z., Li, X., Zhou, B., and Jiang, T. (2018). Transcriptome Analysis of Poplar Under Salt Stress and Over-Expression of Transcription Factor NAC57 Gene Confers Salt Tolerance in Transgenic Arabidopsis. Front. Plant Sci., 9. 10.3389/fpls.2018.01121
[49]
Ghosal "Products and With Structural Similarities" EMBO J. (1987)
[50]
MYB transcription factors in Arabidopsis

Christian Dubos, RALF STRACKE, Erich Grotewold et al.

Trends in Plant Science 2010 10.1016/j.tplants.2010.06.005

Showing 50 of 155 references

Cited By
572
International Journal of Molecular...
International Journal of Molecular...
Metrics
572
Citations
155
References
Details
Published
Sep 30, 2019
Vol/Issue
10(10)
Pages
771
License
View
Authors
Cite This Article
Elamin Hafiz Baillo, Roy Njoroge Kimotho, Zhengbin Zhang, et al. (2019). Transcription Factors Associated with Abiotic and Biotic Stress Tolerance and Their Potential for Crops Improvement. Genes, 10(10), 771. https://doi.org/10.3390/genes10100771