journal article Open Access Sep 12, 2022

Live-cell imaging in human colonic monolayers reveals ERK waves limit the stem cell compartment to maintain epithelial homeostasis

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Abstract
The establishment and maintenance of different cellular compartments in tissues is a universal requirement across all metazoans. Maintaining the correct ratio of cell types in time and space allows tissues to form patterned compartments and perform complex functions. Patterning is especially evident in the human colon, where tissue homeostasis is maintained by stem cells in crypt structures that balance proliferation and differentiation. Here, we developed a human 2D patient derived organoid screening platform to study tissue patterning and kinase pathway dynamics in single cells. Using this system, we discovered that waves of ERK signaling induced by apoptotic cells play a critical role in maintaining tissue patterning and homeostasis. If ERK is activated acutely across all cells instead of in wave-like patterns, then tissue patterning and stem cells are lost. Conversely, if ERK activity is inhibited, then stem cells become unrestricted and expand dramatically. This work demonstrates that the colonic epithelium requires coordinated ERK signaling dynamics to maintain patterning and tissue homeostasis. Our work reveals how ERK can antagonize stem cells while supporting cell replacement and the function of the gut.
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References
59
[1]
Adrian "Particle-imaging techniques for experimental fluid mechanics" Annual Review of Fluid Mechanics (1991) 10.1146/annurev.fl.23.010191.001401
[2]
Aikin "MAPK activity dynamics regulate non-cell autonomous effects of oncogene expression" eLife (2020) 10.7554/elife.60541
[3]
Ashton "Focal adhesion kinase is required for intestinal regeneration and tumorigenesis downstream of wnt/c-myc signaling" Developmental Cell (2010) 10.1016/j.devcel.2010.07.015
[4]
Brown "Correction of aberrant growth preserves tissue homeostasis" Nature (2017) 10.1038/nature23304
[5]
Carver "A high-throughput assay for small molecule destabilizers of the KRAS oncoprotein" PLOS ONE (2014) 10.1371/journal.pone.0103836
[6]
Chang "Gene expression profiling-derived immunohistochemistry signature with high prognostic value in colorectal carcinoma" Gut (2014) 10.1136/gutjnl-2013-305475
[7]
Choi "Programmable in situ amplification for multiplexed imaging of mrna expression" Nature Biotechnology (2010) 10.1038/nbt.1692
[8]
Coleman "Membrane blebbing during apoptosis results from caspase-mediated activation of ROCK I" Nature Cell Biology (2001) 10.1038/35070009
[9]
De Simone "Control of osteoblast regeneration by a train of erk activity waves" Nature (2021) 10.1038/s41586-020-03085-8
[10]
Di Micco "Oncogene-induced senescence is a DNA damage response triggered by DNA hyper-replication" Nature (2006) 10.1038/nature05327
[11]
Frost "A requirement for extracellular signal-regulated kinase (ERK) function in the activation of AP-1 by ha-ras, phorbol 12-myristate 13-acetate, and serum" PNAS (1994) 10.1073/pnas.91.9.3844
[12]
Lentiviral Vectors to Probe and Manipulate the Wnt Signaling Pathway

Christophe Fuerer, Roel NUSSE

PLoS ONE 2010 10.1371/journal.pone.0009370
[13]
Gagliardi "Collective ERK/Akt Activity Waves Orchestrate Epithelial Homeostasis by Driving Apoptosis-Induced Survival" (2020) 10.1101/2020.06.11.145573
[14]
Gjorevski "Tissue geometry drives deterministic organoid patterning" Science (2022) 10.1126/science.aaw9021
[15]
Haigis "Differential effects of oncogenic K-ras and N-ras on proliferation, differentiation and tumor progression in the colon" Nature Genetics (2008) 10.1038/ng.115
[16]
Hino "ERK-mediated mechanochemical waves direct collective cell polarization" Developmental Cell (2020) 10.1016/j.devcel.2020.05.011
[17]
Hiratsuka "Intercellular propagation of extracellular signal-regulated kinase activation revealed by in vivo imaging of mouse skin" eLife (2015) 10.7554/elife.05178
[18]
Retrograde ERK activation waves drive base-to-apex multicellular flow in murine cochlear duct morphogenesis

MAMORU ISHII, Tomoko Tateya, Michiyuki Matsuda et al.

eLife 2021 10.7554/elife.61092
[19]
Johnson "Signaling dynamics control cell fate in the early Drosophila embryo" Developmental Cell (2019) 10.1016/j.devcel.2019.01.009
[20]
Kabiri "Wnt signaling suppresses MAPK-driven proliferation of intestinal stem cells" The Journal of Clinical Investigation (2018) 10.1172/jci99325
[21]
Kim "Epigenetic memory in induced pluripotent stem cells" Nature (2010) 10.1038/nature09342
[22]
Kita-Matsuo "Lentiviral vectors and protocols for creation of stable hesc lines for fluorescent tracking and drug resistance selection of cardiomyocytes" PLOS ONE (2009) 10.1371/journal.pone.0005046
[23]
Le "Adhesion-mediated heterogeneous actin organization governs apoptotic cell extrusion" Nature Communications (2021) 10.1038/s41467-020-20563-9
[24]
Leach "Oncogenic BRAF, unrestrained by TGFβ-receptor signalling, drives right-sided colonic tumorigenesis" Nature Communications (2021) 10.1038/s41467-021-23717-5
[25]
Lee "Graphene quantum dots as anti-inflammatory therapy for colitis" Science Advances (2020) 10.1126/sciadv.aaz2630
[26]
Li "Pyrvinium pamoate regulates MGMT expression through suppressing the wnt/β-catenin signaling pathway to enhance the glioblastoma sensitivity to temozolomide" Cell Death Discovery (2021) 10.1038/s41420-021-00654-2
[27]
Marchiando "The epithelial barrier is maintained by in vivo tight junction expansion during pathologic intestinal epithelial shedding" Gastroenterology (2011) 10.1053/j.gastro.2011.01.004
[28]
ERK Activation Propagates in Epithelial Cell Sheets and Regulates Their Migration during Wound Healing

Yutaka Matsubayashi, Miki Ebisuya, Sakiko Honjoh et al.

Current Biology 2004 10.1016/j.cub.2004.03.060
[29]
Mills "Apoptotic membrane blebbing is regulated by myosin light chain phosphorylation" The Journal of Cell Biology (1998) 10.1083/jcb.140.3.627
[30]
Miyoshi "In vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture" Nature Protocols (2013) 10.1038/nprot.2013.153
[31]
Miyoshi "Prostaglandin E2 promotes intestinal repair through an adaptive cellular response of the epithelium" The EMBO Journal (2017) 10.15252/embj.201694660
[32]
Närhi "Sustained epithelial beta-catenin activity induces precocious hair development but disrupts hair follicle down-growth and hair shaft formation" Development (2008) 10.1242/dev.016550
[33]
Nguyen "Development of a hierarchical double application of crisp cluster validity indices: a proof-of-concept study for automated FTIR spectral histology" The Analyst (2015) 10.1039/c4an01937g
[34]
Nusse "Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche" Nature (2018) 10.1038/s41586-018-0257-1
[35]
Pérez-González "Mechanical compartmentalization of the intestinal organoid enables crypt folding and collective cell migration" Nature Cell Biology (2021) 10.1038/s41556-021-00699-6
[36]
Pokrass "Cell-cycle-dependent ERK signaling dynamics direct fate specification in the mammalian preimplantation embryo" Developmental Cell (2020) 10.1016/j.devcel.2020.09.013
[37]
Potten "Measurement of in vivo proliferation in human colorectal mucosa using bromodeoxyuridine" Gut (1992) 10.1136/gut.33.1.71
[38]
Regot "High-sensitivity measurements of multiple kinase activities in live single cells" Cell (2014) 10.1016/j.cell.2014.04.039
[39]
Reischmann "BRAFV600E drives dedifferentiation in small intestinal and colonic organoids and cooperates with mutant p53 and apc loss in transformation" Oncogene (2020) 10.1038/s41388-020-01414-9
[40]
Reyes "Fluctuations in p53 signaling allow escape from cell-cycle arrest" Molecular Cell (2019) 10.1016/j.molcel.2019.02.035
[41]
Riemer "Transgenic expression of oncogenic BRAF induces loss of stem cells in the mouse intestine, which is antagonized by β-catenin activity" Oncogene (2015) 10.1038/onc.2014.247
[42]
Rozhok "Toward an evolutionary model of cancer: considering the mechanisms that govern the fate of somatic mutations" PNAS (2015) 10.1073/pnas.1501713112
[43]
Sanman "Generation and quantitative imaging of enteroid monolayers" Methods in Molecular Biology (2020) 10.1007/978-1-0716-0747-3_6
[44]
Santos "Growth factor-induced MAPK network topology shapes erk response determining PC-12 cell fate" Nature Cell Biology (2007) 10.1038/ncb1543
[45]
Seno "Efficient colonic mucosal wound repair requires trem2 signaling" PNAS (2009) 10.1073/pnas.0803343106
[46]
Serra "Self-organization and symmetry breaking in intestinal organoid development" Nature (2019) 10.1038/s41586-019-1146-y
[47]
Oncogenic ras Provokes Premature Cell Senescence Associated with Accumulation of p53 and p16INK4a

Manuel Serrano, Athena W Lin, Mila E McCurrach et al.

Cell 1997 10.1016/s0092-8674(00)81902-9
[48]
Shih "Alpha-mangostin suppresses phorbol 12-myristate 13-acetate-induced MMP-2/MMP-9 expressions via alphavbeta3 integrin/FAK/ERK and NF-kappab signaling pathway in human lung adenocarcinoma A549 cells" Cell Biochemistry and Biophysics (2010) 10.1007/s12013-010-9091-2
[49]
Sugimoto "Reconstruction of the human colon epithelium in vivo" Cell Stem Cell (2018) 10.1016/j.stem.2017.11.012
[50]
Thorne "Small-Molecule inhibition of Wnt signaling through activation of casein kinase 1α" Nature Chemical Biology (2010) 10.1038/nchembio.453

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Published
Sep 12, 2022
Vol/Issue
11
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Funding
Wellcome Trust Award: WT223952/Z/21/Z
National Institutes of Health Award: GM130864
Cite This Article
Kelvin W Pond, Julia M Morris, Olga Alkhimenok, et al. (2022). Live-cell imaging in human colonic monolayers reveals ERK waves limit the stem cell compartment to maintain epithelial homeostasis. eLife, 11. https://doi.org/10.7554/elife.78837
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