Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change

Sheng‐Yuan Qin; Zheng‐Yu Zuo; Cen Guo; Xin‐Yu Du; Shui‐Yin Liu; Xiang‐Qin Yu; Xiao‐Guo Xiang; Jun Rong; Bing Liu; Zhi‐Fang Liu; Peng‐Fei Ma; De‐Zhu Li

doi:10.1111/mec.16904

journal article Mar 13, 2023

Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change

Sheng‐Yuan Qin

Zheng‐Yu Zuo Cen Guo Xin‐Yu Du Shui‐Yin Liu Xiang‐Qin Yu

Xiao‐Guo Xiang

Jun Rong

Bing Liu

Zhi‐Fang Liu Peng‐Fei Ma De‐Zhu Li

Molecular Ecology Vol. 32 No. 11 pp. 2850-2868 · Wiley

View at Publisher Save 10.1111/mec.16904

Abstract

AbstractThe evergreen versus deciduous leaf habit is an important functional trait for adaptation of forest trees and has been hypothesized to be related to the evolutionary processes of the component species under paleoclimatic change, and potentially reflected in the dynamic history of evergreen broadleaved forests (EBLFs) in East Asia. However, knowledge about the shift of evergreen versus deciduous leaf with the impact of paleoclimatic change using genomic data remains rare. Here, we focus on the Litsea complex (Lauraceae), a key lineage with dominant species of EBLFs, to gain insights into how evergreen versus deciduous trait shifted, providing insights into the origin and historical dynamics of EBLFs in East Asia under Cenozoic climate change. We reconstructed a robust phylogeny of the Litsea complex using genome‐wide single‐nucleotide variants (SNVs) with eight clades resolved. Fossil‐calibrated analyses, diversification rate shifts, ancestral habit, ecological niche modelling and climate niche reconstruction were employed to estimate its origin and diversification pattern. Taking into account studies on other plant lineages dominating EBLFs of East Asia, it was revealed that the prototype of EBLFs in East Asia probably emerged in the Early Eocene (55–50 million years ago [Ma]), facilitated by the greenhouse warming. As a response to the cooling and drying climate in the Middle to Late Eocene (48–38 Ma), deciduous habits were evolved in the dominant lineages of the EBLFs in East Asia. Up to the Early Miocene (23 Ma), the prevailing of East Asian monsoon increased the extreme seasonal precipitation and accelerated the emergence of evergreen habits of the dominant lineages, and ultimately shaped the vegetation resembling that of today.

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Cited By

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Anthropogenic disturbance driving population decline of a dominant tree in East Asia evergreen broadleaved forests over the last 11,000 years

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Metrics

32

Citations

135

References

Details

Published: Mar 13, 2023
Vol/Issue: 32(11)
Pages: 2850-2868
License: View

Authors

S

Sheng‐Yuan Qin

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China; University of Chinese Academy of Sciences Beijing China

Z

Zheng‐Yu Zuo

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

C

Cen Guo

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

X

Xin‐Yu Du

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

S

Shui‐Yin Liu

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China; University of Chinese Academy of Sciences Beijing China

X

Xiang‐Qin Yu

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

X

Xiao‐Guo Xiang

Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Centre for Watershed Ecology, Institute of Life Science and School of Life Sciences Nanchang University Nanchang China

J

Jun Rong

Jiangxi Province Key Laboratory of Watershed Ecosystem Change and Biodiversity, Centre for Watershed Ecology, Institute of Life Science and School of Life Sciences Nanchang University Nanchang China

B

Bing Liu

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany Chinese Academy of Sciences Beijing China; Sino‐African Joint Research Center Chinese Academy of Sciences Wuhan China

Z

Zhi‐Fang Liu

Key Laboratory of Chemical Biology of Ministry of Education, School of Pharmaceutical Sciences, Cheeloo College of Medicine Shandong University Jinan China

P

Peng‐Fei Ma

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

D

De‐Zhu Li

Germplasm Bank of Wild Species, Kunming Institute of Botany Chinese Academy of Sciences Kunming China; University of Chinese Academy of Sciences Beijing China; CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany Chinese Academy of Sciences Kunming China

Funding

Youth Innovation Promotion Association of the Chinese Academy of Sciences Award: Y201972

Cite This Article

Sheng‐Yuan Qin, Zheng‐Yu Zuo, Cen Guo, et al. (2023). Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change. Molecular Ecology, 32(11), 2850-2868. https://doi.org/10.1111/mec.16904

Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change

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