🏷️ Research Keyword

Genomics

24 articles 14 journals → 6 researchers →

Publication trend

Open Access Journal Article Genome Biology Dec 05, 2014

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I Love · Wolfgang Huber · Simon Anders

10.1186/s13059-014-0550-8 96,948 citations

Open Access Journal Article Genetics in Medicine May 01, 2015

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

Sue Richards · Nazneen Aziz · Sherri Bale · David Bick +8 more

10.1038/gim.2015.30 31,073 citations

Open Access Journal Article Bioinformatics Jan 28, 2010

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan · Ira M. Hall

10.1093/bioinformatics/btq033 29,719 citations

Journal Article Journal of Computational Biology Apr 16, 2012

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich · Sergey Nurk · Dmitry Antipov · Alexey A. Gurevich +12 more

10.1089/cmb.2012.0021 26,525 citations

Open Access Journal Article Genome Biology Mar 04, 2009

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead · Cole Trapnell · Mihai Pop · Steven L Salzberg

10.1186/gb-2009-10-3-r25 22,755 citations

Open Access Journal Article Genome Biology Jun 24, 2011

Metagenomic biomarker discovery and explanation

Nicola Segata · Jacques Izard · Levi Waldron · Dirk Gevers +3 more

10.1186/gb-2011-12-6-r60 16,185 citations

Journal Article Nature Biotechnology Jan 01, 2011

Integrative genomics viewer

James T Robinson · Helga Thorvaldsdóttir · Wendy Winckler · Mitchell Guttman +3 more

10.1038/nbt.1754 16,167 citations

Open Access Journal Article Bioinformatics Sep 07, 2011

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoč · Steven L. Salzberg

10.1093/bioinformatics/btr507 15,379 citations

Open Access Journal Article Nucleic Acids Research Jul 03, 2010

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

K. Wang · M. Li · H. Hakonarson

10.1093/nar/gkq603 15,305 citations

Open Access Journal Article Bioinformatics Jun 09, 2015

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simão · Robert M. Waterhouse · Panagiotis Ioannidis · Evgenia V. Kriventseva +1 more

10.1093/bioinformatics/btv351 14,159 citations

Open Access Journal Article Genome Biology Apr 25, 2013

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim · Geo Pertea · Cole Trapnell · Harold Pimentel +2 more

10.1186/gb-2013-14-4-r36 13,579 citations

Open Access Journal Article Bioinformatics Mar 16, 2009

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell · Lior Pachter · Steven L. Salzberg

10.1093/bioinformatics/btp120 12,091 citations

Open Access Journal Article Bioinformatics Aug 04, 2005

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Ana Conesa · Stefan Götz · Juan Miguel García-Gómez · Javier Terol +2 more

10.1093/bioinformatics/bti610 11,978 citations

Open Access Journal Article Genome Research Mar 18, 2008

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino · Ewan Birney

10.1101/gr.074492.107 8,385 citations

Open Access Journal Article Nucleic Acids Research Nov 28, 2016

KEGG: new perspectives on genomes, pathways, diseases and drugs

Minoru Kanehisa · Miho Furumichi · Mao Tanabe · Yoko Sato +1 more

10.1093/nar/gkw1092 7,599 citations

Open Access Journal Article Genome Research Mar 15, 2017

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk · Dmitry Meleshko · Anton Korobeynikov · Pavel A. Pevzner

10.1101/gr.213959.116 4,072 citations

Journal Article Annual Review of Biophysics and Biomolecular Structure Jun 01, 2000

Comparative Protein Structure Modeling of Genes and Genomes

Marc A. Marti-Renom · Ashley C. Stuart · András Fiser · Roberto Sánchez +2 more

10.1146/annurev.biophys.29.1.291 2,654 citations

Journal Article Science Oct 05, 2001

Protein Structure Prediction and Structural Genomics

David Baker · Andrej Šali

10.1126/science.1065659 1,271 citations

Journal Article Nature Structural Biology Jun 01, 2001

Dennis Vitkup · Eugene Melamud · John Moult · Chris Sander

10.1038/88640 267 citations

Open Access Journal Article Nucleic Acids Research Jan 01, 2004

MODBASE, a database of annotated comparative protein structure models, and associated resources

U. Pieper

10.1093/nar/gkh095 199 citations

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Top Researchers

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John Moult 3

Cole Trapnell 3

Pavel A. Pevzner 2

Andrej Šali 2

Steven L Salzberg 2

Sergey Nurk 2

Journals

14 journals publish on "Genomics".

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